Tinamus guttatus (white-throated tinamou): 104565576
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Entry
104565576 CDS
T08560
Symbol
SF3B1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104565576 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgt03041
]
104565576 (SF3B1)
03036 Chromosome and associated proteins [BR:
tgt03036
]
104565576 (SF3B1)
Spliceosome [BR:
tgt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104565576 (SF3B1)
Complex B
104565576 (SF3B1)
Complex C
U2 SnRNP specific factors
104565576 (SF3B1)
Chromosome and associated proteins [BR:
tgt03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104565576 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
104565576
NCBI-ProteinID:
XP_010210571
LinkDB
All DBs
Position
Unknown
AA seq
1347 aa
AA seq
DB search
MSCLFERLVVGFEFSGIPYAGYCGELAVSRDRIEQMYVSVCVNVKRPAFVGVFFLDIEAQ
IREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSTS
LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPERLDP
FADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGASSQPPSKR
KRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDP
TPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTD
RGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMS
MTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTP
LGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKI
MKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVID
RILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDI
DNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGC
AILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQ
HRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCG
TDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDL
KDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTV
VNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVV
LYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCID
LVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATP
LNNLKEQXRQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEY
IGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWP
NVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQ
DALISHYPRIYNDEKNTYIRYELDYIL
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtctgtttgagcggctagtagttggctttgaattctctggaattccctatgcg
ggatattgtggggagctggctgtttctagagacagaattgagcagatgtatgtgtctgtc
tgcgtgaatgtaaaaagacctgcgtttgttggtgtctttttcctagatattgaagcacaa
attcgagaaattcaaggaaaaaagcctgcccttgatgaagcacaaggagtaggccttgat
tccacaggatattatgatcaagaaatttatggtggcagtgacagcaggtttgctggatat
gtaacttctattgctgcaactgaattagaagatgatgatgatgactactcttctacaagt
ttgcttggtcagaagaagccaggataccatgctccagtggcattacttaatgacatacca
cagtccactgaacagtatgatccctttgcagaacaccgtcctcaaaagattgcagatcgg
gaggatgaatacaaaaagcacaggcggatgatgataatttcccctgaacgccttgatcct
tttgcagatggagggaagactccagatcctaaaatgaatgccagaacatacatggatgtt
atgcgtgaacagcatttaacaaaagaagagagggaaattaggcaacagctagcagaaaaa
gctaaagctggagagcttaaagtcgtcaatggagcttcatctcagccaccgtcaaaacgc
aaacggcgttgggatcagacagctgatcagactcctggtgctacacccaaaaaactgtcc
agctgggatcaagcagagactcctggacatactccctctctgcgatgggatgaaactcca
ggccgtgcaaaaggcagtgaaactcctggtgccacaccaggctcaaaaatatgggatcct
actcccagccatacaccagcgggagctgcaacacctggacgggacacacctggtcatgcc
acaccaggccacggaggtgccacatccagtgcacgtaaaaatcggtgggatgaaacacct
aaaacagaaagagatactccgggacatggcagtggatgggctgagactcctcgtacagat
cgtggtggtgattcgatcggtgagactccaacacctggagcaagtaaaagaaagtcacga
tgggatgaaacacctgctagccagatgggtggcagcactcctgttctgacacctggcaaa
acacccattggtaccccagctatgaacatggcaactcctacaccaggtcatataatgagt
atgactcctgaacaactgcaggcttggcgttgggagagggaaatagatgagagaaacaga
ccactttctgatgaagaattggatgccatgttcccagaaggatataaggttcttccccca
ccagctggttacgtccctattcgcactccagctcgcaaactgacagcaactccaacgcct
ttgggtggcatgactgggttccacatgcagacagaagacaggactatgaagagtgtcaat
gatcaaccctctggaaatcttccattcctaaaaccagatgatatccagtactttgataaa
ctgttggttgatgttgatgaatcaacgctgagtcccgaagaacagaaggagaggaaaata
atgaagttacttttgaaaataaagaatggcacacctcccatgagaaaggctgcattgcga
cagattactgataaagctcgggagtttggagcagggccattgtttaaccagattctacct
ctgctcatgtcgccgacgcttgaggaccaagaacgtcacttgctggtcaaagtcattgat
agaattctctacaagctggatgacttggtccgaccatatgtacacaagatccttgtcgtc
attgaaccactgctgattgatgaagactactatgccagagtggaaggcagagaaattatt
tccaacttggccaaggctgctggtttggcaacaatgatctccacgatgcgacccgatatt
gataacatggatgaatacgtccgaaacaccacagctcgagcctttgctgtcgttgcctct
gctttgggcattccttctctgttacccttcttgaaagctgtctgtaaaagcaaaaaatcc
tggcaggctaggcataccggcatcaaaattgtgcagcaaattgctattcttatgggttgt
gctatcttgcctcatctcaggagcttggttgaaattatcgaacatggtttggtggatgag
cagcagaaagtccgtaccatcagtgctttggctattgctgctttggctgaagcagctact
ccctatggtattgagtcattcgattctgttctgaagcctttatggaagggtatacgtcaa
cacagaggaaagggtttggctgcctttttgaaggctattggttatctgattccactgatg
gatgctgagtatgcaaactattataccagagaagtcatgctaatcctgatcagagagttc
cagtctcctgatgaagagatgaaaaaaattgtattgaaggtggtaaagcagtgctgtggt
acagatggtgttgaagcaaactacattaaaacagagatcttaccaccatttttcaaacac
ttctggcagcacagaatggcattggataggagaaactacagacagttggttgatacaaca
gtggagctggcaaataaagtcggagcagcagaaattatttctagaattgtggatgatctg
aaggatgaggcagagcagtacagaaaaatggtcatggaaacaattgagaagataatggga
aatcttggagcagcagacattgatcataagctggaagagcagcttattgatggtatcttg
tatgccttccaggaacagaccacagaggattctgtgatgctgaatggctttggcacggtg
gtcaatgctctgggcaaaagagttaaaccatatttgccacagatctgtggtactgttttg
tggcgtttgaacaacaaatcagctaaagttaggcagcaggctgccgacctgatctctcgt
actgcagttgtcatgaagacttgtcaagaggaaaaactgatgggccacttgggtgttgtg
ttgtatgagtacctgggtgaagaatatcctgaagtcctgggcagcatcctcggagcactt
aaggccattgtgaatgttataggcatgcacaagatgacaccacccatcaaggacctgctg
ccgcgcctcacgcccattctgaagaacagacacgagaaggtgcaggagaactgcattgac
cttgttggccgtattgcagacaggggtgcagaatatgtttctgcaagagaatggatgagg
atctgctttgagctgcttgaattattaaaagctcacaagaaagctatccgaagagccacg
gtcaacacctttggctatattgcaaaagctattggacctcatgatgtactggctaccccg
ctgaacaacctgaaagagcagnngagacaaaacagagtgtgcactacagtggcaattgcc
attgtagctgaaacgtgctcacctttcacagtgctgcctgcactcatgaatgaatacaga
gttccagagctgaatgtccagaatggtgtgttgaaatctctttctttcctgtttgaatac
atcggagagatgggaaaagattacatttatgctgttacaccattgctggaggatgcttta
atggacagagacctcgtgcacaggcagactgccagcgcggtggtgcagcacatgtccctc
ggtgtttatggatttggctgtgaagattctctcaaccatttgttaaactacgtgtggccc
aacgtgtttgaaacctctccccatgtcatccaggcggtgatgggggctctggagggcctc
cgagtcgctatcggtccatgccgaatgctgcagtattgcttgcagggtttgtttcaccct
gctcgcaaagtcagagatgtttattggaagatttataattccatctacattggttcacag
gatgctctgatttcccattatccaagaatctataatgacgaaaagaacacctacattcgc
tatgaacttgactacatcttataa
DBGET
integrated database retrieval system
