Tinamus guttatus (white-throated tinamou): 104567748
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Entry
104567748 CDS
T08560
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104567748 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgt03019
]
104567748 (XAB2)
03041 Spliceosome [BR:
tgt03041
]
104567748 (XAB2)
Messenger RNA biogenesis [BR:
tgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104567748 (XAB2)
Spliceosome [BR:
tgt03041
]
Complex B
Other components
Prp19-related factors
104567748 (XAB2)
Complex C
104567748 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_8
TPR_12
RPN7
ATG1-like_MIT2
Mucin
Motif
Other DBs
NCBI-GeneID:
104567748
NCBI-ProteinID:
XP_010212898
LinkDB
All DBs
Position
Unknown
AA seq
1086 aa
AA seq
DB search
MAEREGPEATEATETGTRMVETGTKVTEMGTETTEMVTETPEMATGATGAAEGAATETAE
AAEDVSHEEQLLRCPFSVRSWLCVPVIPNIPDVSVIPDAAEDVSHEEQLLRCPFSVRSWL
RYLDAKRRAPPARLNLLYERALRQLPGSYKLWYLYLKQRRRQVKAKCVTDPAYEEANNCH
ERALVFMHKMPRVWLDYCSFLGAQGRVTRTRHSPNVLSMPRVWLDYCSFLGGQGPVTRTR
HIPNVPFNVPRNVPNVPCHCPQHPLSLSRMSPQMPRVWLDYCSFLAAQGRVTCTRHIPNV
PFNVPKMPRVWLDYCSFLGAQGRVTRTRHSPNVPPNVPNMPRVWLDYCSFLGAQGCVTRT
RHSPDVPPNVPSVPHCCPQCPLSLSPMSPQMPRVWLDYCSFLAAQGRMPRVWLDYCSFLG
AQGCVTRTRHSPDVPPNVPSVPHCCPQCPLSLSPMSPQMPRVWLDYCSFRAAQGRVTCTR
HIPNVPFNMLRVWLDYCSFLGAQGRVTRTRHSPSVPPNVPNLCPENAEEFVTYLRSAGRL
DEAAVRLAALVNDERFVSKEGKSNYQLWHELCALISQHPEQVTSLDAGAIIRGGLTRFTD
QRGQLWCALADYYIRSGHFEKARDVYEEAVQTVATVRDFAQVFDSYAHFEESVIAATMEG
LGGDAGDEDGEVALELRLARFEREVALELRLARFEGLVIQTYTEAVSTVEPLKATGRPHS
LWVAFARFYEEPGPLDDMSVXXXXXXXVAFRRVEELAAVWCERGELELRHGAPAAALSVL
RKATALPAKRAEYFDASEPVQNRLYKSLKVWAMLADLEESLGTFQSTKAVYERILDLRIA
TPQIVINYALFLEEHGYFEESFKAYERGIALFRWPNVADIWHTYLSKFTARYGGRKLERA
RDLFEQALDGCPQKYAKTIYLLYAKLEEDFGLARHAMAVYERATRAVLPAEQYDMFNIYI
KRAAELYGVTHTRPIYEKAIEVLADEPGRGQGLLSLRGHRDTQGHGDTRTGGHDGHTWGC
AIYGYCSQMCDPRITATFWQTWKAFEVRHGNEDTIRELLRVRRSVQATYNTQVNFMASQM
LKVYSN
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgagaggggccggaggcgacggaagcgacagaaacggggacaagaatggta
gaaacggggacaaaagtgacagagatggggacggaaaccacagaaatggtgacagaaacc
cccgaaatggcgacgggagcgacaggggcggcggagggagcggcgacagagacggcagag
gctgccgaggacgtgtcccacgaggagcagctcctgcgctgtcccttctcggtccgctcc
tggctctgtgtccctgttatccccaatatccccgatgtctccgttatccccgatgccgcc
gaggacgtgtcccacgaggagcagctcctgcgctgtcccttctcggtccgttcctggctg
cgctacctggacgccaagcgccgggcgccgcccgcgcggctcaacctgctgtacgagagg
gccctgcggcagctgccgggcagctacaagctctggtacctctacctgaagcagcggcgg
cgccaggtgaaggccaagtgcgtcaccgacccggcctacgaggaggccaacaactgccac
gagcgcgccctggtcttcatgcacaagatgccgcgcgtgtggctggactactgctcgttc
ctgggtgcgcagggccgcgtcacccgcacacgtcacagccccaatgtcctgtcaatgccg
cgtgtgtggctggactactgctcgttcctgggcgggcagggccccgtcacccgcacacgt
cacatccccaatgtccccttcaatgtcccccgcaatgtccccaatgtcccctgtcactgt
ccccaacatcccctgtcgctgtcccgaatgtccccgcagatgccacgcgtgtggctggat
tactgctcgttcctcgcggcgcagggccgcgtcacctgcacacgtcacatccccaatgtc
cccttcaatgtccccaagatgccgcgcgtgtggctggactactgctcgttcctgggtgcg
cagggccgcgtcacccgcacgcgccacagccccaatgtcccccccaacgtccccaatatg
ccgcgcgtgtggctggattactgctcctttctgggtgcgcagggctgcgtcacccgcacg
cgccacagccccgatgtcccccccaacgtccccagtgtccctcactgctgtccccaatgt
cccctgtcactgtccccaatgtccccgcagatgccgcgcgtgtggctggactactgctcg
ttcctggcggcgcagggccgcatgccgcgcgtgtggctggattactgctcctttctgggt
gcgcagggctgcgtcacccgcacgcgccacagccccgatgtcccccccaacgtccccagt
gtccctcactgctgtccccaatgtcccctgtcactgtccccaatgtccccgcagatgccg
cgcgtgtggctggattactgctcgttccgcgcggcgcagggccgcgtcacctgcacacgt
cacatccccaatgtccccttcaatatgctgcgtgtgtggctggactactgctcgttcctg
ggtgctcagggccgcgtcacgcgcacgcgccacagccccagtgtgcctcccaacgtcccc
aatctgtgtcccgagaacgccgaggagtttgtcacctacctgcgctcggccgggcggctg
gacgaggcggccgtgaggctggcggccctggtcaacgacgagcgcttcgtgtccaaggag
ggcaagagcaactaccagctgtggcacgagctgtgcgcgctcatctcgcagcacccggag
caggtgacgtccctggacgccggcgccatcatccgcgggggcctgacccgcttcacggac
cagcgcgggcagctctggtgcgccctggccgactactacatccgctcgggccacttcgag
aaggcgcgtgacgtctacgaggaggcggtgcagacggtggccacggtgcgggacttcgcg
caggtcttcgacagctacgcgcacttcgaggagagcgtcatcgccgccaccatggagggg
ctgggcggggacgccggggacgaggacggggaggtggccctggagctgcggctggcccgc
ttcgagcgggaggtggccctggagctgcggctggcccgcttcgagggcttggtcatccag
acgtacacggaggccgtgagcaccgtggagcccctcaaggccaccgggcgtccccacagc
ctgtgggtggccttcgcccgcttctacgaggagcccggcccgctggacgacatgagtgtn
nnnnnnnnnnnnnnnnnnnnngtggccttccggcgcgtggaggagctggcggccgtgtgg
tgcgagcggggcgagctggagctgcggcacggggcgcccgcggccgcgctgagcgtcctc
aggaaggccacggcgctgccggccaagcgggccgagtacttcgacgcgtcggagcccgtc
cagaaccgcctctacaagtcgctcaaggtctgggccatgttggccgacctggaggagagc
ctgggcaccttccagtccaccaaggccgtgtacgagcgcatcctggacctgcgcatcgcc
accccccagatcgtcatcaactacgcgctgttcctggaggagcacggctacttcgaggag
agcttcaaggcctacgagcgcggcatcgcgctgttccgctggcccaacgtggcggacatc
tggcacacctacctgagcaagttcacggcgcgctacggcgggcgcaagctggagcgggcg
cgggacctgttcgagcaggcgctggacggctgtccccagaaatacgccaagaccatctac
ctgctgtacgccaagctggaggaggacttcgggctggcgcggcacgccatggcggtgtac
gagcgggcgacgcgcgccgtgctgcccgccgagcagtacgacatgttcaacatctacatc
aagcgcgcggccgagctctacggtgtcacccacacgcggcccatctacgagaaggccatc
gaggtgctggcggacgagcccgggcggggccagggcctgctatcactgcggggacacagg
gacacacaaggacatggggacacgaggacagggggacacgacggtcacacttggggatgc
gccatctacggctactgctcccagatgtgcgacccgcggatcacggccaccttctggcag
acgtggaaggcattcgaggtgcggcacggcaacgaggacaccatccgggagctgctgcgg
gtgcgccgcagcgtccaggccacctacaacacccaggtcaacttcatggcctcgcagatg
ctcaaggtctacagcaac
DBGET
integrated database retrieval system
