Tinamus guttatus (white-throated tinamou): 104567881
Help
Entry
104567881 CDS
T08560
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03013
Nucleocytoplasmic transport
tgt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104567881 (UPF1)
03015 mRNA surveillance pathway
104567881 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgt03019
]
104567881 (UPF1)
Enzymes [BR:
tgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104567881 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104567881 (UPF1)
Messenger RNA biogenesis [BR:
tgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104567881 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104567881 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104567881
NCBI-ProteinID:
XP_010213038
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MLQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPAC
VVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLR
ARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLE
ADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPL
WKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVD
ETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAID
SPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVI
CCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCK
KAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKK
GFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGII
TPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFL
NDPRRLNVALTRARYGVIIVGNPKALSKQPNLRESLMQFSKPRKLVNTINPGARFMTTAM
YDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPP
PGYFGQANGPAAGRGAPKGKTGRGGRQKNRFAIPGTSQSNLPNSQASQDVVSQPFSQGPL
TQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTG
LSQY
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaggttaatgggcctgatggcattctgcagaatggagctgtggatgataacgtg
gctaaaaccagccagcttctggcagagctgaactttgaggaagatgaggaagatacctat
tacacaaaggaccttcctgtgcatgcctgcagctactgtgggatccatgacccagcttgt
gtggtttactgcaacaccagcaaaaaatggttctgtaatggacgtggaaatacttcgggc
agccacatcgttaaccatctcgtgagagcgaagtgcaaggaggtgactctccataaggat
gggcctctgggagagactgtcctggagtgttacaactgcggatgtcgtaacgtgtttctc
ctgggctttattccagccaaggcagactctgtggtggttttgctgtgcaggcaaccatgt
gccagtcagagcagtttaaaggatattaactgggacagttcccagtggcagcctctcatc
caggaccgctgtttcctttcgtggctggtaaagattccatctgaacaggaacagctgaga
gcacgtcagattacagctcagcagattaacaaactggaagaactttggaaggaaaatccg
tctgcaaccctggaggatttagaaaagccaggtgttgatgaagagccgcagcatgttctt
ctcagatacgaagatgcttatcagtaccaaaatatattcgggcctctagtcaagcttgag
gcggactatgacaagaaactcaaggagtctcagactcaagataacatcacagtcagatgg
gacttgggcttgaacaagaaaagaattgcttatttcactttgccgaagactgattcagat
atgcgtcttatgcaaggagatgagatctgcttgaggtataagggagacctggctcctttg
tggaagggaattggtcatgttatcaaagttcctgataattatggtgacgagatagccatc
gagctaagaagcagcgttggagcacctgtggaagttactcataacttccaagtcgatttt
gtgtggaagtctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtggat
gagacttcagtgtctgggtacatctatcacaagctgttaggccatgaggtagaagatgta
attattaaatgccaattgccaaagcgctttacagcacaaggacttcctgatctcaaccat
tctcaggtttatgctgtgaagactgtcctgcagaggcctctgagtctcattcagggtccc
cctggtacaggaaaaacagtgacatcggccacaattgtctatcatctggctagacagggc
aatgggcctgtgttggtctgtgctccgagtaacatagctgtagatcagttgactgagaag
attcaccaaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgac
tctcctgtgtccttcttggcattacacaaccaaatcagaaacatggatagtatgccagag
cttcagaaactgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaa
cgttaccgggcactgaaacgaacggcagagcgtgaattacttatgaatgcagacgtgatc
tgttgcacgtgtgtgggagctggcgatccaagacttgcaaaaatgcagttccgctccatt
ttgattgacgaaagcacccaggccactgagccggagtgcatggtgcccgtggtcctggga
gcaaaacagctgattctcgtgggtgaccactgccagctggggcccgtggtgatgtgcaag
aaggcagccaaggccgggctgtcgcagtccctcttcgagaggctcgtggtgctggggatc
cggcccatccgcctgcaggtgcagtaccgcatgcatcccgcgctcagcgccttcccatcc
aatatcttctatgagggttcactccagaacggcgttactgcagctgaccgtgtgaaaaag
ggatttgacttccagtggccgcagccagataaaccaatgtttttctatgttacacaagga
caagaggaaattgccagttcaggcacctcttatttaaacaggactgaagcagccaatgtg
gagaagataacgacaaagttattgaaggctggtgccaaaccagatcagattggcattatt
actccctatgaaggtcaacgatcttacctggtgcagtacatgcaattcagcggttccttg
catacaaaactttaccaggaagtggaaattgcgagcgtggatgccttccagggccgagag
aaggactttattatcctttcttgtgtaagggccaacgaacaccaaggaataggatttctg
aatgaccctaggcgtcttaatgtggctcttacaagagcaaggtatggagtaatcattgtt
gggaacccaaaagcgctgtctaaacaaccaaacctccgggagagtctcatgcagttcagc
aagccccggaaacttgtcaacaccatcaatcctggtgcccgttttatgactactgccatg
tacgacgcacgtgaggccattattccaggatctgtctatgaccggagcagtcaagggcgc
ccatccaacatgtacttccaaacccatgaccagatcgggatgattagtgctggccccagc
cacgtcactgctatgaacattcccatccctttcaacctcgtgatgccacccatgccacca
ccgggatactttggccaggccaacggaccagctgcaggacgcggggcaccaaaaggaaag
accgggcgcggtgggcgtcagaaaaaccgttttgcgattcctggaactagtcagtcaaac
cttccaaacagccaagcgagccaggatgtggtgtcccagccgttctcccagggccccctg
actcaggggtatatctccatgagtcagccgtcgcagatgagccagcctgggctctcccaa
ccagaattatcacaggacagttaccttggtgatgagtttaagtctcagatcgatgtggcg
ctgtcacaggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacggga
ctgtcacagtattag
DBGET
integrated database retrieval system
