KEGG   Tinamus guttatus (white-throated tinamou): 104568919
Entry
104568919         CDS       T08560                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tgt  Tinamus guttatus (white-throated tinamou)
Pathway
tgt03030  DNA replication
tgt03410  Base excision repair
tgt03420  Nucleotide excision repair
tgt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tgt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104568919 (LIG1)
   03410 Base excision repair
    104568919 (LIG1)
   03420 Nucleotide excision repair
    104568919 (LIG1)
   03430 Mismatch repair
    104568919 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tgt03032]
    104568919 (LIG1)
   03400 DNA repair and recombination proteins [BR:tgt03400]
    104568919 (LIG1)
Enzymes [BR:tgt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104568919 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     104568919 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     104568919 (LIG1)
DNA replication proteins [BR:tgt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    104568919 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     104568919 (LIG1)
DNA repair and recombination proteins [BR:tgt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     104568919 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     104568919 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     104568919 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 104568919
NCBI-ProteinID: XP_010214149
LinkDB
Position
Unknown
AA seq 883 aa
MPRGALTLRTAYTSQHAPVPPTFPGVPRAAPPSVTSGRVAGVPLSVPPGPVVSRYQHCPT
WQVLLLPPVWVVSQTRYWSWYFPVMTQSWYCPGWSFFAAARSPEPGPVPPPALEQGEDPA
EEPPGRGDRDGQDAASPCPRVPGAASPGGSSAGSTSSAEESPDGSSVPRVPRRRTAQKQV
TKRKGELANANGNVPEPDPKRLREEPGDQCESDSTEEEKDPSSEEAKEGKDSSGDRDVQT
SEMPKPSKAVADFFAPRKGSRTKTEAKAALKAAAPKNSAPVGTEGTNGAASSPSQATEPL
DPAQYNPSKSSYHPVHDACWAPGQRVPYLAVARTFERIEEVSARLKNIETLSNFLRSVIA
LSPSDLLACVYLCLNRLGPAYEGLELGIGESILMKAVAQATGRQLEKIKSEAQEKGDLGS
LQGKLRIGLAEQSVLVALAHAASLTPPGQGSSEPRGAPQVSGSLTAGLLFPSSELPNYGT
IIPVLLEHGLESLPLHCKITPGIPLKPMLAQPTKGVGELLKRFEEAAFTCEYKYDGERAQ
IHILEDGAVYVYSRNQENNTSKYPDIVTRIPKVQKASVRSCILDAEAVAWDPEKKQIQPF
QVLMTRKRKDVEAAEIKVQVCLYAFDMLYLNGESLVKEPFSKRRRLLRESFVETEGEFLF
ATSMDACSTEEISEFLDQSIKDSCEGLMVKTLDVDATYEIAKRSHKWLKLKKDYLEGVGD
TLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEESLEKHHSFLKDH
VLPQPRPYYRWDSGAAPDHWLAAVQVWEVKCGDLSISPIYKAAVGLVDEDKGISLRFPRF
LRVREDKKPEEATSSSQVAELYKKQQQIQNQQLPEKGEDEDFY
NT seq 2652 nt   +upstreamnt  +downstreamnt
atgccccgcggcgcgctcacgctgcggacggcctacacttcccagcatgccccggtgccg
cctacgtttcccggcgtcccgcgcgcggctccgccgtcagtgacgtcagggcgggttgct
ggtgtcccactctcggtaccgcctggcccagtggtgtcccggtaccagcactgcccgacc
tggcaggtgctgctgttaccgcctgtctgggtggtctcacagacccggtactggtcctgg
tacttcccagtgatgacccagtcctggtactgcccaggctggtcgttcttcgcggccgcc
cgctcgccggagcccggccccgtgccgccgcctgcgttggagcaaggtgaggaccccgcg
gaggagcccccgggacgcggggaccgtgatggacaggacgccgcctccccgtgtccccgc
gtgccgggtgctgcgtccccaggtggcagctccgctggcagcacctcctcggctgaagag
agtcccgatggctcctccgtcccccgtgtcccccggcgcaggacagctcagaagcaggtc
accaagcgcaaaggggagctggcgaacgcgaatgggaacgtcccggagcctgatcccaag
cggctgagggaagagccaggagaccaatgtgaatcggatagcacggaggaggagaaggat
ccgagctcggaggaggctaaggagggaaaagacagcagcggggacagggatgtgcagaca
tcggagatgccgaagcccagcaaagctgttgctgacttctttgcccccaggaagggatca
aggacaaagacggaggccaaggcagccctgaaggcagcagcccccaagaattcagctcct
gttggcaccgaaggcaccaacggggccgcaagcagcccctcgcaggccaccgagccgctg
gatccggcccagtacaacccctccaagagcagctatcaccccgtgcacgacgcctgctgg
gctcccgggcagagggtcccctacctggccgtggctcggaccttcgagcgcatcgaggag
gtctctgcccgcctgaagaacatcgagaccctgagcaacttcctgcgctccgtcatcgcc
ctgtccccgtcggacctcctggcctgcgtctacctctgcctgaaccgcctgggccctgcc
tacgaggggctggagctgggcatcggggagagcatcctcatgaaggccgtcgcgcaggcc
acgggccgccagctggagaagatcaagagcgaggcccaggagaagggggacctggggtcg
ctgcaggggaagctgcgcatcggcctggcggagcagtcggtgctggtggcgctggcccac
gccgcctcgctgacccccccagggcaaggctcctcggagcctcgtggggctccccaggtc
tcgggctcgctcacggccgggctgcttttcccttccagcgagttgcccaactacggcacc
atcattcccgtgctgctggagcacgggctggagagcctgcccctgcattgcaagatcacc
ccagggatcccgctgaagcccatgctggctcagcccaccaaaggcgtcggggagctcctg
aagcgcttcgaggaggccgccttcacctgcgagtacaagtacgacggcgagcgagctcag
atccacatcctggaggacggcgccgtgtacgtctacagccgcaaccaggagaacaacacc
tccaagtaccccgacatcgtcacccgcatccccaaggtccagaaggccagtgtgcgctcg
tgcatcctggacgcagaggctgtcgcctgggacccggagaagaagcaaatccagcccttc
caggtgctgatgacacggaagaggaaggacgtggaggctgccgagatcaaagtgcaagtg
tgcctgtatgcctttgacatgctgtacctcaacggcgagtcgctggtgaaggagcccttc
tccaagcgccggcggctgctgcgcgagtccttcgtggagacggagggcgagttcctcttc
gccacctccatggacgcctgcagcactgaggaaatctccgaattcctggaccagtccatc
aaggactcctgcgagggcctcatggtgaagacgctggacgtggacgctacctatgaaatt
gcgaagcggtcgcacaagtggctgaagctgaagaaggattacctggaaggggtgggcgac
acgctcgacttggtggtcatcggcgcctacctgggcaagggcaagcgcgtgggcatgtac
gggggcttcctgctggcctgctacgacgaggagagcgaggagtaccagagcatctgcaag
atcgggaccggcttcaccgaggagagcctggagaagcaccacagcttcctcaaggaccac
gtcctgccccagccgcggccctactaccgctgggacagcggggcggcccccgaccactgg
ctggcggccgtgcaggtctgggaggtgaaatgtggcgacctctccatctcccccatctac
aaggcagccgtgggcctggtggatgaggacaaaggcatctccctgcgcttcccccgcttc
ctgcgcgtgcgggaggacaagaagcccgaagaggccaccagcagttcccaggtggccgag
ctctacaagaagcagcagcagatccagaaccagcagcttcccgagaaaggggaggacgag
gacttctactga

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