Tinamus guttatus (white-throated tinamou): 104572840
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Entry
104572840 CDS
T08560
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt04382
Cornified envelope formation
tgt04510
Focal adhesion
tgt04512
ECM-receptor interaction
tgt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104572840
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104572840
09142 Cell motility
04820 Cytoskeleton in muscle cells
104572840
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104572840
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tgt04147
]
104572840
00536 Glycosaminoglycan binding proteins [BR:
tgt00536
]
104572840
Exosome [BR:
tgt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104572840
Glycosaminoglycan binding proteins [BR:
tgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104572840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104572840
NCBI-ProteinID:
XP_010218313
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
GEQGVRGPPGPPGPAPHMKEKGSEIIRGEKGDPGEKGEQGIPGLPGSGFKGDKGEPGKPG
PRGKPGKDGEPGPKGEPGLPGGFGIPGRPGEPGLKGEKGDQGLPGPPGRIIDTGTVDSFG
EKGDPGASGLPGLKGQKGEKGFPGIQGIPGPPGRPVPDRVGAPGVPGERGEKGEKGSPGF
PLPGPPGRDGFPGPPGLPGPPGPPGVTDGVDQCQPGEPGAPGRPGAPGQHGFPGEMGEKG
DKGESCATCEVGPPGLPGPQGPPGPAGFPGQAGFKGERGLPGLDGLPGVPGPPGTPGLTG
SPGAKGEPGDFSYDSILKGEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPKGASGTAGLK
GERGPPGQPGFPGVRGERGFPGPPGIGSAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTV
PLPGPPGADGLPGPPGFPGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQG
QPGSPGQPGTPGTPGLDGLPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGXXXXXXXXXX
XXXRXGFPGIPGQQGFRGDPGLPGIQGLQGSPGAPGLGPQGSPGPAGQPGPQGPPGFPGI
KGERGFPGIPGLDMPGPKGDKGSQGQPGVPGSVGLPGLPGPQGTVGPKGSSGAKGEMGVM
GTPGLPGSPGPVGERGFPGEKGSPGFKGVIGPQGDPGVKGDKGEVGLPGKPGSMDGMDMV
SLKGQKGDQGEKGDHGATGEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDP
GIPGQKGSVGEMGLPGTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPG
EKGEPGRTGSPGLSGEKGEKGSAGLPGMPGVPGPKGSPGMAGFPGSPGRHGEKGEKGLPG
LSGIPGLKGEPGEPGLPGPAGSAGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGD
KGAKGDVGFPGSPGSPGIPGLKGEPGFAGPPGPKGSQGLPGLPGSAMEGPKGDRGPQGQP
GLPGIPGPTGPPGPPGLKGAKGEQGSNGWPGTPGGPGVKGDPGFQGLPGSPGLPGDIGQK
GDLGPPGVPGVPGPKGSPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGP
VGPVGLKGFPGLPGPKGQQGVTGPSGIPGPPGSPGFDGKPGQKGDIGPYGPPGPRGLPGP
PGPEGLPGAMGPPGAASVAHGFLVTRHSQTTEEPQCPFGTRLIYHGYSLLYVQGNERAHG
QDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPF
ISRCAVCEAPAMVIAVHSQTIQIPQCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANAYSFWLATIERHEMFKKPTPSTLKAGDLRSNVSRCQV
CMRKT
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
ggagaacaaggagttaggggcccccctggacctccaggcccagctccacatatgaaagag
aaaggaagtgaaatcatcagaggagaaaagggtgatcctggtgaaaagggtgaacagggt
atcccaggattgccaggctcaggtttcaaaggggacaagggtgaacctgggaaacctggt
ccacgtggaaagcctggaaaagatggtgaaccaggaccaaaaggagaacccggcttgcct
ggcgggtttgggattcctggacgacccggtgaacctggtcttaagggtgaaaaaggtgat
caaggtctgccagggcctccaggaagaattatagatactggaacagtcgattcttttggt
gaaaaaggagaccctggagcttcaggcttgccaggactgaaaggtcaaaaaggtgaaaaa
ggtttccctggaatacaaggaatcccaggtcctccaggtcgacctgttccagaccgggta
ggagcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccaggattc
cctttacctggacctcctggcagagatggtttcccaggtcctcctgggttgcctggtcca
ccaggtcctccaggtgtaacagatggggttgatcaatgccagccaggtgaacctggtgcg
ccaggtagacctggagctccaggacagcatggatttccaggagagatgggagagaaaggt
gacaaaggtgaatcctgtgccacatgtgaagtaggacctcctggattgccaggaccacaa
gggccaccaggtccagcaggttttccgggacaagcgggcttcaaaggtgaaagaggctta
cccggacttgatggacttccaggcgtacctgggcccccaggaactccaggacttacaggc
agccctggggcaaaaggagaaccaggagatttttcttatgactctatcctgaaaggcgaa
aagggagatcctggtttcccaggtcaaccaggtattcccggaagagaagggacaccagga
aaggatggcctaccaggtccacaggggccgaaaggagcatcgggtacagctggcttgaaa
ggagaacgtggtccccccggccagcctggattccctggagtccgtggtgaaagaggcttt
cctggtcctcccgggataggctcagcagggttacctggtgacaaaggagacagaggcttt
gctggaaccccaggtttacccggccttccaggggcaaaaggggaagcaggacgaacagtt
cctctccctggtcctcctggggcggatggccttcctgggccacctggtttccctggaccc
caaggtgacaaaggaaatcctggactaccaggaagacccggcctgccaggagaaaaaggt
gctgttgggcagccaggtataggattccctggacctccgggacctaaaggtttccaaggt
cagcctggctctcctggtcagccaggtactccaggaactcctggcctggatggtttgccc
ggtgtcccaggtttacaaggtcaaaaaggtgaacctggagtaggtctcccaggccctaag
ggattaccaggcccaccaggtccagctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnaganaaggatttccagggattccgggtcagcaaggattccgaggtgaccct
ggcctgcccggcatacaaggtttacagggctctccaggtgcaccaggactaggaccacag
ggatcaccagggcctgctgggcaaccaggaccccagggaccaccaggatttcctggaata
aaaggagaaaggggctttcctggtatcccaggtctagacatgccaggaccaaaaggggat
aaaggtagccagggccaacctggagtaccaggctctgtggggttacctggcctgcctgga
ccacaagggacagttggaccgaaaggatcatcaggagccaaaggagaaatgggagttatg
ggaactcctggattgccagggtctcctggaccagttggagaacgagggtttcctggtgaa
aaaggtagtccgggtttcaaaggagtaattggaccacaaggtgatcctggtgtcaagggg
gataaaggtgaagtaggtctcccgggaaaacctggaagcatggatggcatggacatggtt
agtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatggagcaacaggagaa
aaagggttacgtggggagtatggagaaccaggaattccagggaaggatggtgaacctggt
actccaggacatccaggaccaaaaggtgatcaagggcctccagggtacccaggagatcca
ggaattccaggacaaaaaggatcagttggtgaaatgggtttgccaggaacacccggagaa
aagggtctgccgggaattccaggttcaccaggaacaccaggtttccctggacaaaaaggt
gaaaaaggagacaaaggagcagcaggttttcctggaattggttttccaggatctcctggt
gagaagggagaaccaggaagaacgggtagtccaggcttatctggagagaagggtgaaaaa
ggtagtgcaggacttccaggaatgccgggggtgccaggtcccaaaggatcccctggcatg
gcaggctttccaggaagcccaggtcgtcatggagaaaagggtgaaaaaggacttcctggc
ttaagtggcattccaggcttaaaaggagaaccaggagaaccgggtcttccgggtcctgct
ggttccgctggacagaaaggtgaaccaggttatgatgggattcctggtgcagctggtgca
aagggtgaacaaggtcttcctggtagaggacttccaggatttccaggtgcaaagggagat
aaaggtgcaaaaggtgacgtgggttttccaggatctccagggagtccagggatcccaggt
ctgaaaggagaaccaggatttgcagggccaccaggccctaaaggcagccaaggtcttcct
ggactaccgggaagtgcaatggagggacctaaaggagacagaggaccccaaggccaacct
gggcttccaggcataccaggtccaacagggccaccaggacccccaggactaaaaggggcc
aaaggagaacaggggagcaatggctggcctgggactcctgggggtccaggagtcaaaggt
gacccaggattccagggcttgcctggtagtccaggtttaccaggcgatattggtcaaaag
ggtgatttgggacctccaggagtcccaggtgttccaggtccaaaaggatctcctgggttc
ccgggtcttaagggagagcgaggtgaccaaggtcttcctggatctaaaggtttacaaggc
ccgccaggtccaccaggtgcttttcagcttgttaaaggggatcctggtttgcctggccct
gtaggaccggttggtctcaaaggattcccgggacttccaggtcccaaaggacagcaagga
gttacaggaccttcaggtatacctgggccacctggtagcccaggatttgatggcaaacct
gggcagaaaggagatattggtccttatggtcctccagggcccagaggactccctggtcca
cctggtcctgaaggtttgcctggagctatgggtcctccaggtgcagcgtctgttgctcat
ggcttccttgttaccagacacagtcagacaactgaagaaccacaatgtccatttggaact
aggctgatttaccatggttactccttgctttatgtacaaggaaatgaaagagcacacggc
caggatttgggcacagcagggagctgtcttcgtaaatttagtactatgccatttttattc
tgcaatatcaacaatgtatgtaactttgcatcaaggaatgattattcttactggctgtcc
actcctgaacccatgccaatgagtatggctcctatcactggtgataatatcagaccattc
atcagcagatgtgctgtgtgtgaggctcctgctatggtgatagctgttcacagtcaaaca
attcaaataccccaatgtcctgaaggctggagttcactctggattggttactcctttgtc
atgcacaccagtgctggtgccgagggctctggccaggccctggcctctccgggttcctgc
ctagaggagtttcgcagcgctcccttcatcgaatgccacggccggggcacctgcaattac
tatgcaaatgcttacagcttctggcttgccactatagagaggcatgagatgttcaagaaa
cctacgccctcaacgttgaaagcaggcgatctgcggtcaaacgttagccgatgtcaagtc
tgtatgagaaaaacataa
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