Tinamus guttatus (white-throated tinamou): 104574512
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Entry
104574512 CDS
T08560
Symbol
DDX42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104574512 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgt03041
]
104574512 (DDX42)
Enzymes [BR:
tgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104574512 (DDX42)
Spliceosome [BR:
tgt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104574512 (DDX42)
Complex B
104574512 (DDX42)
Complex C
U2 SnRNP specific factors
104574512 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104574512
NCBI-ProteinID:
XP_010220070
LinkDB
All DBs
Position
Unknown
AA seq
945 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEENSNVELPYIPAENSPTRQQLHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYNEHEEITSLTPQQVVELRQKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESSDRGNNSSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANADGPIAATAAAKGVPGFTSSGNLSSVPT
FPSVGIQGFNSTNASTNSREGIGCSSGGGGGVGGSSGVGGSGGVXXXXXXXXXXXXRHND
VQRRAEGAGRYNDVQRHGEGGGRHADGYRHGDSRHGDSHRHGENRHPPDASGGNRNNGDR
RNSNEGRNNENRNGENRKEGNSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctggaaagaaagaggaaccgaagctctctcagcaatctcacagtgcttttgga
acagctggttcttccgctgcatttgcgaaatcgggacctccacagctgccttctttctat
aaaattgggtcaaagcgagcgaattttgatgaagagaatgcatattttgaggatgaagag
gaagagaacagcaatgtcgagctgccatacattcctgcagagaattcccccactcgccag
cagcttcattccaagtcagcggactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagaggcttgaagataaagacaaggag
aaaaagaacgcaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggccgaaaatcccaccgctggtgtggtgcaagaagaggaggaggataac
cttgagtatgacagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccgtttgagaaaaatttctataatgag
cacgaagaaatcacgagtctcaccccacagcaagtggtagagctgcgtcaaaagctaaat
ctccgggtctctggtgctgctcctccacggcctggtagtagttttgctcattttggtttt
gacgagcaacttatgcatcaaattaggaaatctgagtatacccagcccactcctatacaa
tgtcagggtgttccagttgcactgagtggcagagatatgattggaatagctaagactgga
agtggaaaaacagcagccttcatctggccaatgctgattcacatcatggatcaaaaggag
cttgaaccaggggatggtccgattgctgtgatcgtgtgcccgactagagagctttgccaa
cagattcattctgaatgtaagcgctttggtaaagcctataatctgcgctcagtagctgtg
tacggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacgaaccttcagaga
gtcacttaccttgtgtttgatgaagcagacagaatgtttgatatggggtttgaatatcag
gtcagatccatcgcaagccatgtacgtcctgacagacagaccctcttgttcagtgccact
tttcgtaagaagattgagaaattggcccgtgatattctcatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcggcgcctcgtggagttcacgtcgtctgggagt
gtcctcctctttgtcaccaagaaggcaaatgcagaagagctggccaataacctcaagcag
gaagatcataatctagggctgcttcatggtgacatggatcagagtgagaggaataaagtc
atctcagaatttaagaagaaggggatcccaatactggtagcaactgatgtggcagcccgt
gggttggacattccttccattaagactgtgatcaactacgacgtggcacgagacatagac
acgcacacccaccgaatcggtcgtactggcagagcgggcgagaagggggttgcctacact
ctgctgactccaaaagatagcaactttgctggcgatctcgtcaggaatttggaaggagct
aatcaacatgtttccaaagagctgttggatcttgcaatgcagaacccgtggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagctgaatattgggggtggtggcttaggatac
cgtgaacgtcccggtctgggatcagaaagttctgaccgtggaaacaacagcagtgtgatg
agtaactatgaggcctacaagccgtcctcgggggcgatgggagacagacttacagcaatg
aaagcagcttttcagtcccaatataagagccacttcgttgctgcaagccttaacaaccaa
aagactggtagctcggccgctggcgctagcggctggaccagcgccgggagcttgaattcg
gtaccgacgagttcggcgcagcaaaacgctgccaacgccgacggccccatcgcagccaca
gccgcagccaagggtgttccaggcttcaccagcagcgggaatctgagtagcgttcccacc
ttcccaagcgtcggaatacagggcttcaacagcacgaatgccagcaccaacagtcgggaa
ggcatcggttgcagcagtggtggtggcggcggtgttggtggcagtagtggtgttggtggc
agtggcggtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgccacaacgat
gttcagcgccgcgcggagggtgctggtcgctacaacgatgttcagcgccacggagagggg
ggcggtcgccatgccgatgggtaccgccacggagacagccggcacggggacagccatcgc
cacggtgaaaaccggcaccctccggatgcaagcggtggtaatcgcaataacggtgacaga
aggaatagcaacgaagggaggaacaacgagaacaggaacggtgagaacaggaaggaaggc
aacagccgagacaacaagacagatggttttgctgtccctgagcccccaaaacgcaagaag
agccgatgggacagttaa
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