Tinamus guttatus (white-throated tinamou): 104575180
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Entry
104575180 CDS
T08560
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tgt03016
]
104575180 (RTCB)
Enzymes [BR:
tgt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104575180 (RTCB)
Transfer RNA biogenesis [BR:
tgt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104575180 (RTCB)
Prokaryotic type
tRNA splicing ligases
104575180 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104575180
NCBI-ProteinID:
XP_010220813
LinkDB
All DBs
Position
Unknown
AA seq
496 aa
AA seq
DB search
MCRATKAQINTAELSLLAPEHAVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQI
GNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRT
NLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAED
KEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGID
HKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKG
MAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERT
LLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHG
AGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAG
ISKKAIKLRPIAVIKG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgtgccacaaaggcacaaataaacacggcagagctcagcctcctagcacctgaa
catgcagtggagggcgttttctacgtgaacgacccgctggagaagctgatgttcgaggag
ctgcgcaacgcgtgccgcggcggaggtgcgggaggcttcttgcctgcgatgaagcagatt
gggaatgtggcagcgttgcctggcatcgttcatagatctataggcctcccagatgtgcat
tcaggctatggatttgccattggcaacatggcagccttcgatatgaatgatcccgaagca
gtggtgtcgccaggtggtgtcgggtttgacatcaactgtggtgtccgcttactccgtaca
aatttggacgaaagtgacgtacagcctgtgaaggagcagcttgcccaggctatgtttgac
cacattcctgttggtgtgggctccaagggtgtgatccccatgaatgccaaggatttggaa
gaggctctagaaatgggggtggactggtctctccgggaaggctatgcctgggcagaggac
aaggagcactgtgaggagtatggaagaatgctgcaggctgatcccaacaaggtttcctca
agagcaaagaagaggggcctccctcagctggggaccctgggagcagggaaccattacgcc
gagatccaggttgtggatgacatttacaacgaatacgcagccaggaaaatgggcatcgac
cacaaggggcaggtgtgcgtgatgatccacagcggcagcaggggtttgggccaccaggtt
gccacagacgcactggtagctatggaaaaggccatgaaacgggacaaaatcatagtgaac
gatcgccagctggcgtgtgccaggatcgcctctgcagaaggccaggattacctgaaggga
atggcagctgctgggaactacgcttgggtcaatcgctcttctatgactttcttaacacga
caggcctttgccaaagtcttcaacactaccccagatgacctcgatatgcatgttatctat
gatgtttctcacaacattgccaaagtggagcaacatgtagtggatggaaaagagcggacg
ctgctggtgcacaggaagggatccaccagggccttcccccctcaccatccccttattgct
gttgattatcaactgactgggcagcctgtgctgattggtgggaccatgggtacctgcagc
tacgtccttactggcacggagcaaggcatgacagagaccttcggaactacttgtcatgga
gctggtcgtgcactgtctcgagccaaatctcgacgtaacttggacttccaggatgtattg
gacaagctggccgacatgggcattgccatccgtgttgcatctcccaagctggttatggaa
gaagcaccagagtcttacaagaacgtgacagatgtggttaacacctgccatgcagctggc
atcagcaagaaagccattaaattgagacctattgctgtaattaaaggctag
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