Tinamus guttatus (white-throated tinamou): 104577483
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Entry
104577483 CDS
T08560
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tgt03009
]
104577483 (PDCD11)
Ribosome biogenesis [BR:
tgt03009
]
Eukaryotic type
90S particles
Other 90S particles
104577483 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
Spt6_S1
HAT_PRP39_N
OB_RRP5_4th
Suf
TPR_14
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_19
OB_RRP5
TPR_15
TPR_16
TPR_12
TPR_CcmH_CycH
ARM_TT21
ARM_TT21_5th
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
104577483
NCBI-ProteinID:
XP_010223262
LinkDB
All DBs
Position
Unknown
AA seq
1836 aa
AA seq
DB search
MASVEESFPRGGTQKKATEEKAAKPKIEQDNLFDIHHEEKTHKRKRSQVDQGKQKKKKLK
LDKKDTSKDKXESLTVEALCEGMLLLGCIKEVNDFELVISLPNGLSGFVPVTQISDAYSK
MLSEQVAEGELREDLNSLLDMYSPGTLVRCIVTSVEKSADGRRSIRLSINPKKVNKGLAA
AALAVGMLLSGTVSSVEDHGYIIDIGVRGTNAFLPRQKAPNYIKLAKKGPDLKIGQNLNC
LIVEVKNEGRIVRLSIDRSEVAASLATERQNWTLTNLLPGLVVKAQVQKVAPLGITLSFL
SSFTGIVDFMHMDPKKSMNYSPNQVVKACILSIHPTSKLVRLTLRQTFLQPGGSPNQLSS
DRIGAVVEESTVKAFFKQFGAFFELDDGSLAYARLKHLSKTRKSFKPAAFKTGCKHKCRI
IDYSLMDEMCILSLKYQVIEARFLQYQDVHTGDVVKGKVLALKPIGMQVKITDGIKGLVP
SMHLADTILKQPEKKYSVGDEVNCRVLECRPEEKKLFLTLKKTLVQSKLPVLSNYEEATP
GLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISSPEEVFHEGQVVKVMVLKCEP
QQERLLLSFKLTSKPVPKGKREHIPMKNQHAKYEIGKMVDVKVLKKKENGLEVSILDDEG
KAIASLPTVYLSDFVANCKLLYHCLQEGDVLPRVMCLNNKGERIILCRKSAVISAVQEEQ
VVRSFSEIQPDMLLTGYVRSVMPFGVFVEFPYGLTGLAPKTSMCDKFVTDTKDHFLVGQT
VIAKVMSTDEEKQRVLLNLKVSECSSGNSSVESFALLSQYFKEVKEIRNLLRRRGESSVA
RSLCDLLPGQELQLVVQDVKEDGSALFSSSSATGLTVTATRYHLGEKGVVPGERAKGLVL
HVDILSSVVHVSLREELLKQRTKQLAENSQHCAVVQHIADECAVISLETGQLAAIPIASH
FNDTFRFDSEKLKVGQMVSVTLKTVKGHDHGVLLAVQDPAKKNVFVRFRKESETALEDTL
TAVQHSLSVGDVITGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPMDSFPTYTLKAGQ
KVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGKAVTMLNHKGDNAPKKLGL
YKVGQTVTCFVKKYNTIKNWLEVEVTPDIRGRVPHLLLSLNTKVLKHPEKSFKSGQALSA
TVTGTDVTETNLCLSLTGIQSLEQGNITVGTVAKVTPHVGLTIALHGGKTGKVSIFHVSD
SYTEKPLDDFKIGRVVRCYVLSTENGKIQLSLRQSRLNPKSSKRAEDVEIASIKDVKKGQ
LVRGYVKSVTPSGVFFSLSASLLGRILFQNVSPYFVRKRSLYKKYLPEGKLLTAKVLGIN
REENHVELSLLPEDTGMSSILPESLGLPRYDAEEERKEREESEKQKELKKLKKKQKRGNS
ESEQETKPKKRKICPADESDSGIEVYCREEEEEDDQKEEEASKKKSMIKKLGEVPRLQVS
TGFTWDEDMNTVDVPALSQKESSDSEEEDLQSKPKKQTKKEKELEKEKMEKELCKVEAAL
MDPSRQPQTADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQ
EKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAEELYH
TMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISKFAQLEFRLG
DPEHAKALFESTLSSYPKRTDIWSIYMDIMIKRGSQKEVRDIFERVIHLSLAPKRMKFFF
KRYLDYEKKYGTEETVLAVKTAALEYVEAKSSLAES
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgtggaagaaagctttccccgaggtggcacccagaaaaaagccacagaggaa
aaagcagccaaaccaaagattgagcaggacaacttgtttgatatccatcatgaagaaaaa
acacacaaaagaaaaagaagtcaagttgatcaaggaaagcagaagaaaaagaagctcaag
ctggacaaaaaagacacttctaaagacaaangtgaatcgctcacagttgaggcgctctgt
gaggggatgctgcttcttggttgtataaaagaagtcaatgactttgaattagtcatcagc
ttgcccaatggactctctggctttgtcccagtgacacagatcagcgatgcctacagcaag
atgctgagtgagcaggtggctgaaggagaactccgggaggacttgaactctctcttggac
atgtattctccaggaacattggtcagatgcattgtgaccagtgttgagaaaagtgctgat
ggacgacgaagcatcagattgtccatcaaccccaagaaggtcaacaagggtctggccgct
gcagcgctcgcagtaggcatgctgctctctggcacagtgtctagtgtggaagaccatggt
tatatcattgatattggagtcagagggactaatgcgttcctgcctcgtcagaaagcccca
aattacatcaaattagccaagaaaggacctgacttgaagataggccagaacctgaactgc
ctcattgtggaagtaaagaatgagggaagaattgtccgtttgtccattgatcggtcagaa
gttgctgcatcccttgcaacagagcgacagaactggacactcactaacttactgcccggg
ctggtggtaaaagctcaagtgcagaaggtggccccattggggatcactctgagctttctc
tcttccttcactggcattgtggatttcatgcacatggatccaaaaaaatccatgaactat
tctccaaatcaagtggtgaaagcttgcatcctctccatccaccccacctccaagctggtg
cgacttactctacggcagaccttcctccagcctggaggatcccccaaccagctctccagt
gaccgcataggggccgtggtggaggagtcaacggtgaaggccttcttcaagcagtttggt
gctttctttgagcttgatgatggcagccttgcgtatgcacggttgaaacacctttcaaaa
acaagaaagtcctttaaacctgcagcatttaagacagggtgcaaacacaaatgccggata
attgactacagcctgatggatgagatgtgtattttatccctgaagtatcaagttattgaa
gctcggttcctgcagtatcaagatgtccatactggggatgtggtgaagggtaaagtatta
gctctgaaacccattgggatgcaagtaaaaattactgatgggattaaagggcttgtgccc
tccatgcatcttgctgacacaatcctgaagcagcctgagaagaagtacagtgtgggagat
gaagtcaattgtcgggtgctggagtgcagacctgaagaaaagaagctatttcttactctg
aaaaaaactcttgtccagtcaaagcttccagtcctttctaattatgaagaggctacacca
ggtctgatcacacatggctttgtggtgtgtgcaagggagtttggctgcattgtgaagttc
tacaatgatgtcaaaggtctggtacccaagaatgagctgagttcagagcccatatcttct
ccagaggaagtcttccatgaaggccaggttgtcaaagtaatggtcttaaaatgtgaaccc
cagcaggaaagacttctgctgtccttcaagttaacaagtaagcctgtccctaaaggtaaa
agggaacatattccaatgaagaaccagcatgcgaaatatgaaataggaaagatggttgat
gtgaaagtcttgaagaagaaggagaatggcctagaggtttccatcttggatgatgaaggc
aaagccattgcctcgcttcccacagtttacctttcagacttcgttgctaactgcaagctc
ctgtaccattgccttcaagagggagatgtcctgcctagagttatgtgcctaaataacaag
ggagagcgtattattttgtgcagaaagtctgcagtcatttctgctgtacaggaggagcaa
gtggtgagaagcttctctgaaatccagcctgatatgcttctgactggctatgtgaggagc
gtgatgccttttggtgtgtttgtggaattcccttatggccttacaggactggcacccaaa
acaagcatgtgtgacaagtttgtgacagacaccaaggaccactttttggtgggacagact
gtgatcgcaaaggtgatgagcactgatgaagagaagcagcgtgtgctcctcaatctgaag
gtgtcagagtgcagttcaggcaattcttctgtggaaagctttgccttgctaagccagtac
ttcaaggaggtgaaagaaatcaggaacttgctgagaagaagaggggagtccagcgtggcc
cgaagcctttgtgacctgctgcctgggcaggagctgcagctggttgtgcaggatgtgaag
gaggatggctcggccctgttcagcagcagcagtgccacgggcttgactgtaacagctact
cgctaccatttgggagagaaaggtgttgttcctggtgagagagcaaaaggattggttctt
catgtggatatcctctcatccgtggtgcatgtttcccttcgagaagaactgttaaaacaa
agaaccaagcaactggcagagaactcccaacactgtgccgtcgtgcagcacattgcagac
gagtgtgccgtcatctctttggagacgggccagctggctgctatccccatagcctctcac
ttcaacgacaccttccgttttgactcagaaaaactgaaggtgggacagatggtctctgtg
accttaaaaacagtcaaggggcatgaccatggagtcttgttagcggtacaagatccagca
aagaagaatgtttttgtaaggttccggaaagagtctgagacggctttggaagacaccctt
actgctgtgcagcactcgctttctgtgggggatgttattactggaactgttaagtctgtc
aagcctacccatgttacagtcgctattgacgacaagttgacgggttcaatccacgcgtcc
cggatcttggatgaagtacctatggactcctttccaacatatactctgaaagctggacag
aaggtgactgcccgggtcattggaggcagggatgtgaatactcacaggtatctacccatc
acccatccacacttcacacgatccatcccagagctcagcattcgaccaagtgaaatagag
gggaaagctgtaacaatgctgaaccataaaggagacaacgcccctaagaaacttggactc
tacaaagtagggcagactgtgacctgttttgttaagaagtataacaccatcaaaaattgg
ttggaggtagaagtcacacctgacattcgtggaagagttccacatttgctgctgtctctc
aacaccaaggttctaaagcatccagaaaagagcttcaaaagtggccaggcattgtctgct
acagtaactggaacagatgtcactgaaaccaacctttgcttgtcacttacaggaatccag
tcactggaacagggcaacatcaccgtaggcaccgtagcaaaggtgactccacatgttggc
ttgaccattgcattgcatggagggaagactggcaaagtcagtatctttcacgtgagcgat
agctacacagagaagcctctggatgacttcaaaattggcagggttgtcaggtgttatgtc
ctttccactgagaatggcaaaatccagttatctctccggcagtccaggctaaatccgaag
agcagcaaaagagcagaagatgtggaaatagcaagtattaaggatgttaaaaaaggccag
ctagtgaggggctatgtcaaatccgtcactccatcaggggtattctttagcctgtctgct
tctcttctgggtcgaatcctgttccagaatgtttccccttactttgtacggaaacgctcc
ttatataagaaatacctacctgaaggaaaactgcttactgccaaggtccttggtataaac
agggaagaaaaccacgttgagctttctctcctgcctgaggacactgggatgtcaagcatc
ttgcctgagtccctaggcctgccacgctatgatgcagaggaagagagaaaagagagggaa
gagagtgagaagcaaaaagagcttaagaagctgaagaaaaaacagaaaagagggaactct
gaaagtgagcaggagacaaagccaaagaaaaggaagatctgcccagcagatgaaagtgac
agtggaattgaggtgtattgccgagaggaggaggaggaggatgaccagaaagaagaggag
gcatctaaaaagaaatctatgataaagaaacttggtgaggttcccaggctgcaggtttcc
actggtttcacttgggatgaggacatgaacacagttgatgtgccagcactgagccagaag
gagagttcagacagtgaagaggaggatctgcagtccaagccaaagaagcagacaaagaag
gagaaggagctggagaaggagaagatggagaaggagctctgcaaagtagaagctgccctg
atggaccccagtcgacagccccagacagcagatgattttgaccgccttgtgctgagcagt
cccaacagctccatcctctggctgcagtacatggccttccacctgcaggccaccgagatc
gagaaggccagagctgtggcagagagagcgcttaaaaccatctgcttcagggaagagcag
gagaaactaaatgtctgggtagctctgctgaatctggagaacatgtatggcactgaggag
accctgatgaaagtctttgagagagctgttcaatacaatgaacctctaaaagtcttccag
catttgtgtgacatctatgccaattctgagaagtacaagcaagcagaagagctataccac
acaatgctgaagcgtttccgtcaggagaaatctgtgtggctgaagtatgcctccttcctc
ctgaaacaaggccaaactgaggctacacacagacttctggagcgtgctctcaaggctttg
cccaccaaagaacatgtggatgtcatttcaaagtttgcacagctcgagttccgccttgga
gacccagaacacgctaaggccctctttgagagcaccctcagcagttaccccaaacgcacg
gacatctggtccatctacatggacatcatgatcaaacgtggcagccagaaggaagtgcgg
gacatctttgagcgggtcatacacctcagcttggcacccaagaggatgaaattcttcttt
aaacgctatctggattatgagaagaaatatggtacagaagaaactgtcctggctgtcaaa
acagcagcactagagtatgtggaggccaagagttcccttgctgagagctaa
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integrated database retrieval system
