Tinamus guttatus (white-throated tinamou): 104578224
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Entry
104578224 CDS
T08560
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104578224 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgt03019
]
104578224 (CNOT1)
Messenger RNA biogenesis [BR:
tgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104578224 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104578224 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
104578224
NCBI-ProteinID:
XP_010224072
LinkDB
All DBs
Position
Unknown
AA seq
2375 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLQIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVXXXXXXXXXXXXXXVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNP
AANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVR
QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL
ISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLV
LLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIA
PRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLY
VGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacaacatattgtgaatcggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacccaatttttgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgattttcggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagttcatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgcccc
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagcaaaaaccatgatggagagttctctggcagacttcatgcaa
gaagttggctatggcttttgtacgagtgtggaggagtgtcgcaacataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggtcgccagggttttggggatgatggctcggact
cattcgggattgacggacggaattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcgcaggcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaatcctagtttggacttcaaagtagtaacctatgaa
ttggaccatccaggatttcagattcgggacagcaagggcttgcagattgtggtgtttggc
atccagagagggctaggcatggaagtctttccagttaacgccatatacagaccttggaaa
cacgcggagggccagctctccttcattcagcattccctcatcaaccctgacatcttctgt
tttgctgactacccgtgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagagattgcaacatggaagagcctggatttgattgaatctctgttacggttg
gcagaagtgggacagtacgagcaggttaagcagctcttcagttttccaatcaagcactgc
ccagatatgttggtattggccttattgcagatcaacacttcctggcataccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttccatccgccagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggccaaactgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgcatgactttctta
aagagaagatgtccatccatcctgggtggcctggctccagaaaaagaccagcccaaaagt
gctcagcttcctccggaaaccttggcaacgatgctggcttgtctccaggcttgtgctggg
agcgtttctcaggagctgtcggagaccatcctcaccatggtggccaactgcagtaacgtc
atgaacaaggccagacagcccccgcctggagtcatgcccaaagggcggccgcccagcgcc
agcagcctcgatgccatctctcctgtgcagatcgactccctggcaggaatggcatccctc
agcctggggggctcggctgctccgcacacccagagcatgcagggcttcccccccaacctg
ggctccgcgttcagtactccgcagtcaccagcaaaagcctttccccccctctccacccag
aaccagacaacagggttcagcggcatcggaggactctcctcacagcttccagtaggtggc
ctgactacgggtagcctgaccggcataggaactggggccctcggcctccctgcagtgaac
aacgaccccttcgtgcaaaggaaactcagcacatccggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctactttcaacgtatttataaccatccacca
catccgaccatgtctgtggatgaggtgttagagatgctgcagagattcaaggattccaac
attaaacgggaacgcgaagtgtttaattgtatgctgaggaacttgtttgaggaataccgt
tttttcccccaatacccagataaagagctgcacataacagcctgcctcttcggtgggata
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtatcgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttacaggagtacatagagtatggacagcaatccagagat
cctcccgtgaagatgcagggttcaatcaccacccctggcagtattgcacttgcccaggct
caggcccaggcccaagtcccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcgaccaccaccactgttgcaaaaaccatcaccatcactcggccaactggagtc
agcttcaagaaggacgtgccgccttccatcaatactactaacattgatacactgttagta
gcaacggatcaaaccgagagaattgtggagcctccagagaacgttcaggagaagattgct
ttcatcttcaataatctgtctcagtcaaatatgacacaaaaggtcgaggagctgaaggaa
acagtgaaagaagagtttatgccttgggtatcgcagtatcttgtcatgaagagagtcagt
attgagccaaacttccacagcttatattccaacttcctggacactcttaagaatccggag
ttcaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcggaccgttccttgttgaagaaccttggtcattggctggga
atgattacattggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgctg
cttctggaagcatatgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gtcttagaatccagtgtcaggagtgtggtgttcaggcctccaaatccctggacaatggcc
attatgaatgttttagctgaactgcatcaagaacatgatctaaaattgaatctgaagttt
gagattgaggtgctctgcaagaaccttgcgctagacatcaatgaactgaaacctgggagt
ctcctgaaagataaggatcgattgaaaaatctggatgagcagctgtctgctccaaagaag
gatgtgaaacagcctgaagagctgccacccatcacaacaactactgcttctacaactcca
gctaccagcaccacttgtacagccacggttcctccacagcctcagtacagttaccatgac
atcaacgtctactccttaggagggttggccccacacattaccctaaatccaacgattccg
ctgtttcaggcccaccctcagctgaagcagtgcgtgcggcaggcgatcgagcgagcggtg
caagagctggtgcaccccgtggtggatcgctccattaagattgccatgaccacttgcgag
cagatcgtcaggaaggactttgcgctggattcggaggagtcccggatgcgcgtggccgcg
caccatatgatgcggaacctgactgctgggatggccatgataacctgcagggagccgttg
ctgatgagcatagctaccaacttgaagaacagctttgctactgcgctgagggcagcttcc
ccacaacagagggacatgatggagcaagcagctgcccagctagcgcaggataactgcgag
ctcgcgtgctgctttattcagaagacagctgtggaaaaggcaggccccgaaatggataag
aggctagcgaccgaatttgagctcagaaaacatgctagacaagagggtcgtcggtattgt
gatcctgttgtattaacttaccaggcagaacggatgccggaacagatcaggttgaaggtt
ggcggtgtggatcccaaacagctggctgtttacgaagagtttgctcgcaacgtccctggc
ttcttgcctaccaatgatttaactcagcctacgggattcttggctcagcccatgaagcaa
gcctgggctacagatgacgtagctcagatctatgacaagtgtatgacggagctggagcag
cacctgcagtccattccccacacgctggccatgaatccccaagcccaagctctgcgcagc
ctcttggaggccgtggtagtggctcgtaactcccgtgacgctattgctgctctggggctg
ctgcagaaggctgttgagggcttgctggatgccacgagcggggcggatgccgacctcctg
cttcgctatcgtgagtgtcatctgctggtgctgaaggctctgcaggatggccgtgcttac
gggtctccgtggtgtaacaaacaaattaccaggtgcctgattgagtgcagagatgagtac
aagtacaacgtggaggcagtggagttgctaatccgcaatcaccttgttaacatgcagcag
tatgatcttcacttggctcagtcaatggagaatggcttgaactacatggcagtggccttt
gccatgcagttggtaaagatcctcttggtggatgagagaagtgttgcccacgtaacagag
gcagatctgtttcacaccattgagacgctcatgaggattaatgctcactccagaggaaat
gccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagccatgatt
gaccgtgctcatggaggtcccaatttcatgatgcattctggaatatcccaagcctctgag
tacgatgacccaccaggtctgagggagaaggcagaatatctcctgagggaatgggtgaac
ctctaccattcagctgcagcaggccgcgacagtaccaaagctttctctgcgtttgttgga
cagatgcaccagcaaggaatcctgaaaacagatgacctgatcactcgattttttcgtctt
tgcactgaaatgtgtgtcgaaatcagctatcgggctcaggctgagcaacagcacaaccct
gctgccaaccccactatgatccgagccaagtgctaccacaatctggatgcctttgtgcga
cttattgcactgctagtgaagcactcgggggaggccaccaacacagtaacgaagatcaac
ctcctgaacaaggttcttggtattgtggtgggagtcctcctgcaggaccacgatgtccgg
cagagtgaatttcagcagcttccctaccatcgcattttcatcatgctgctgttagaatta
aatgctccggagcacgtgctggagaccatcaacttccagacactcacagccttctgtaac
acatttcacatcctgaggcctacaaaagctccaggctttgtttatgcctggctggaactg
atctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggttgg
cctatgtacgcccagttactgattgatcttttcaagtacttggctccttttcttagaaat
gtggaactcaccaaacctatgcaaattctttacaagggtaccttgcgagtgttgctggtc
ttgttgcatgatttcccagaatttctctgtgactaccactatgggttctgtgatgtgatc
ccccctaactgtatccagctaaggaaccttatcctgagtgccttcccacggaacatgcgg
cttccagaccctttcactcccaacctgaaggtggacatgctgagtgagattaatatcgct
ccacggatccttacaaatttcactggagtgatgccacctcagttcaagaaagatttggat
tcctatctcaaaacccgttctcctgtcactttcttgtctgacttgcgcagcaacctgcag
gtgtcaaatgaacctggcaaccgctacaacatccagctgatcaacgcgctggtgctctac
gtcggtactcaagctattgcgcacatccacaacaagggcagcacgccctccatgagcacc
atcacccactcggctcacatggatatcttccagaatttggcggtagatctggacactgaa
ggtcggtaccttttcttgaacgcaattgccaatcagctgcgctatcccaacagtcacacg
cactacttcagctgcaccatgctctacctgtttgctgaggccaacacggaggctatccag
gagcagatcactagggttctcttggaacgactgattgtaaataggcctcatccctggggt
ctccttattactttcattgagctgataaaaaatccagcgtttaagttctggaaccatgaa
tttgttcactgtgctccagagattgaaaagctgttccagtcggtcgcgcagtgctgcatg
gggcagaagcaggcccagcaagtcatggaagggaccggtgccagttag
DBGET
integrated database retrieval system
