Tinamus guttatus (white-throated tinamou): 104579124
Help
Entry
104579124 CDS
T08560
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104579124 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgt03019
]
104579124 (SKIV2L2)
03041 Spliceosome [BR:
tgt03041
]
104579124 (SKIV2L2)
03009 Ribosome biogenesis [BR:
tgt03009
]
104579124 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
tgt03016
]
104579124 (SKIV2L2)
Enzymes [BR:
tgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104579124 (SKIV2L2)
Messenger RNA biogenesis [BR:
tgt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104579124 (SKIV2L2)
Spliceosome [BR:
tgt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104579124 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104579124 (SKIV2L2)
Ribosome biogenesis [BR:
tgt03009
]
Eukaryotic type
Pre-60S particles
Helicases
104579124 (SKIV2L2)
Transfer RNA biogenesis [BR:
tgt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104579124 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104579124
NCBI-ProteinID:
XP_010225024
LinkDB
All DBs
Position
Unknown
AA seq
1052 aa
AA seq
DB search
MAEAFGDELFRVFEEDAAAIAKKGKASPAAEVAARPGKRPEEKSPVVAPGKSKREAEVSS
TEDAALGKKPRLEEVTSEDVNLADLMPHVKVQAVDTVEGCTHEVALPADEDFTGLKPRTG
KAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPAASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG
PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDC
LSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN
MPARTVLFTSACKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQ
LLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVSKLEE
QYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDDDFG
WGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCNKESLKNSATEAAKPARPDEKGEMQVVP
VLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGL
KKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCERKAQIAVDIKAAKRELKKARTVLQMDE
LKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLS
CFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVV
YTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKI
KRDIVFAASLYLKQSSVGISSTPPSQVKTFRF
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctttcggggacgagctgttccgcgtgttcgaggaggacgcggccgccatc
gccaagaagggcaaagcgagtccggccgccgaggtcgctgcgaggccagggaagcgacca
gaggaaaaatctccggtagttgctccaggaaagtccaaaagggaagcagaagtcagcagt
acagaagatgcagctttgggaaagaagcctagattggaagaagtcacatcagaagatgtt
aatctggcagacctgatgcctcatgtaaaggtgcaagctgtggatactgttgaaggttgc
acacatgaggttgcacttccagcagatgaagacttcacaggtctgaagccaagaactgga
aaagctgcaaaagagtatccgttcattcttgatgcctttcagagggaagctatcctttgt
gtggataacaaccagtctgtattagtgtcagctcatacatcagctggtaaaactgtatgt
gcagagtatgcaattgccttggctttgagggagaaacagcgggtgatatttacaagtcca
attaaagccttgagtaatcagaagtatcgtgagatgtatgaagaatttcaagatgttggt
ttgatgactggagatgtcaccattaatcctgcagcttcatgtctggtaatgacaacagag
attttgagaagtatgctctaccgaggctctgaggttatgcgagaagttgcatgggttata
tttgatgaaattcattacatgagagatacagaacgtggtgtggtttgggaagagacaatt
attttgctccctgacaacgttcactatgtgttcctttctgccaccattccaaatgcccgt
cagtttgctgagtggatctgccatcttcacaaacaaccttgccatgtgatttacacggac
tatcgaccaactccactgcagcattatatattcccagcaggaggagatggactccatctc
gttgtggatgaaaatggagatttcagagaagataattttaatacagcaatgcaagtgctt
agagatgcaggggacttggccaagggggaccagaaaggcaggaaaggaggaacaaaaggt
ccttccaatgtatttaagattgtgaagatgatcatggaaaggaattttcaacctgtaatt
attttcagcttcagtaaaaaagattgcgaagcctatgcacttcagatgacaaagttagat
ttcaatacagatgaagaaaaaaagatggttgaagaagtatttaataatgctattgattgt
ctatcagatgaagacaaaaagctgcctcaggtagagcatgtacttcctcttctgaagcga
ggaattggtatccatcatggcgggctgcttcctatcttaaaagaaaccatagaaattctt
ttctctgagggcttaataaaggctttatttgcaacggagacttttgctatgggaattaac
atgccagccaggactgtgctgttcacaagtgcctgcaaatttgatgggaaggatttccga
tggatatcatcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggaatggat
gacagaggaatagttattcttatggtggatgaaaaaatgagcccaacaattggcaagcag
cttttgaagggttcagctgatcccttgaacagtgcattccacctgacgtacaacatggtg
ctgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatccttctat
cagttccaacattacagagctattccaggagttgtggaaaaggtgagtaaattggaagaa
cagtacaacaaaatagcaatcccaaatgaagaaaatgtggtcatatactacaaaattcgg
cagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaagtactgc
ttaccttttctacagccaggaagactggtaaaggtgaaaaatgaagatgatgactttgga
tggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggtgaattg
gacccactatatgtagttgaggtgcttctgcactgcaacaaggagagtctgaaaaattct
gctactgaggctgccaagccagccagacctgatgagaaaggagagatgcaggttgttcct
gtcctggtccatctcctctcggccatcagcagcgtccggctgtacattccaaaggacttg
aggcctgttgacaacaggcagagtgtgctcaaatccatacaggaggtgcagaagcggttt
cctgatggggtgccgttactggaccctattgatgacatgggcatcaaagatcaaggactg
aaaaaagtcatccaaaaagtggaggcatttgagcataggatgtattcacatcctctccac
aacgatcccaacttggaaactgtgtacaaactttgtgaaagaaaagcgcagatcgctgtg
gatatcaaggcggcaaagcgggagctgaagaaagcccggaccgtcctgcagatggacgag
ctcaagtgccgcaagcgcgtgctgcgccggctgggcttcgccacctcctccgacgtcatc
gagatgaaggggcgcgtggcctgcgagatcagcagtgctgatgagctcctcctgacagaa
atgatgtttaatggtctcttcaatgacttatctgcagaacaggcaactgccctactaagc
tgctttgtgtttcaagagaattccagtgaaatgcccaaactgacagaacaattggcagga
ccacttcgccaaatgcaggaatgtgctaaaagaattgccaaggtctcagctgaagcaaaa
ctggaaattgatgaagaaaattacttaaactctttcagacccaatttaatggatgttgtc
tatacgtgggcaaatggagctaactttgctcacatttgcaaaatgactgatgtctttgaa
gggagcatcatccggtgcatgaggcggctggaggaactgctgcgacagatgtgccaagct
gcaaaagccatcggaaacacagagctggaaaacaagtttgcagagggtattacaaagatc
aagagagatattgtgtttgctgcaagcctttacctgaaacagagctcagttggcatcagc
tccacacctccatctcaagtcaagacatttaggttttaa
DBGET
integrated database retrieval system
