KEGG   Taeniopygia guttata (zebra finch): 100190053
Entry
100190053         CDS       T01082                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03013  Nucleocytoplasmic transport
tgu03015  mRNA surveillance pathway
tgu03040  Spliceosome
tgu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100190053 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100190053 (ALYREF)
   03015 mRNA surveillance pathway
    100190053 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100190053 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgu03019]
    100190053 (ALYREF)
   03041 Spliceosome [BR:tgu03041]
    100190053 (ALYREF)
Messenger RNA biogenesis [BR:tgu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100190053 (ALYREF)
    TREX complex
     100190053 (ALYREF)
Spliceosome [BR:tgu03041]
 Complex C
  Other components
   EJC/TREX
    100190053 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100190053 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 100190053
NCBI-ProteinID: NP_001232343
Ensembl: ENSTGUG00000003513
UniProt: B5FXN8
LinkDB
Position
18:complement(2333853..2337960)
AA seq 254 aa
MADKMDMSLDDFLKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP
VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQ
ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS
QIDTQRRPAQSVNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLFAEEL
DAQLDAYNARMDTS
NT seq 765 nt   +upstreamnt  +downstreamnt
atggccgacaagatggacatgtcccttgacgacttccttaagctcaaccggagccagcgt
ggggccagccggggcggccggggcggccggggccggggcggcaccgcacgcgggggcggg
cccggccggggcggcgttggcggcgggcgcgcgggcggcggccctgtgcggaaccggccg
gtgatggcccggggcggcggcaggaaccggcccgcgccctacagccggccgaagcagctc
cccgagaagtggcagcacgacctgttcgacagcggcttcggggcgggggccggcgtggag
accggcggaaaactgctcgtctccaacctggacttcggcgtttcggatgcggacatccag
gagctctttgcggagtttgggaccttgaagaaggcagctgtgcactacgacagatctggc
cgcagcctaggaacggcagacgtgcatttcgagaggaaggctgatgcgctgaaggccatg
aagcagtacaatggggtccccttggacgggcgccccatgaacatccagctggtgacatca
cagatcgacacgcagcggagaccagcacagagtgtaaacagaggtggcatgaccagaaac
cgtggggtcttggggggatttggaggtggaggcaacaggcgagggacgcgtggcgggaac
agagggagaggcagaggagctggaagaacttccaaacagcagctctttgcagaagaacta
gatgcacagctggatgcttacaatgccaggatggacaccagctaa

DBGET integrated database retrieval system