Taeniopygia guttata (zebra finch): 100217593
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Entry
100217593 CDS
T01082
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
100217593 (SETX)
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100217593 (SETX)
5.6.2.5 RNA 5'-3' helicase
100217593 (SETX)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100217593 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
DUF4164
SAS4
Motif
Other DBs
NCBI-GeneID:
100217593
NCBI-ProteinID:
XP_030142202
Ensembl:
ENSTGUG00000005117
UniProt:
A0A674GDU1
LinkDB
All DBs
Position
17:complement(7103923..7132226)
Genome browser
AA seq
2772 aa
AA seq
DB search
MSTCRWCTQSGADTTDFLNHYAAQRLSQEDFKGSNDDLCYCLECVVQYHKAREACPRLHE
DLWDLETSRLIAHMEKSMNEETGEDELFLVDEHGETPLSGYVGPNFENNLRVPILEILKY
PYLLLHEKVSELCVEVLCRLELSQDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLGK
VDRDDYYDLEEVLTCLFRVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG
ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKAEPESDYGDDMISCSQIVYNY
NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHGTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDILIERFQECDKISEFFLLILVSIVELHRSKKCLHLLW
ISSQEWVEAVVKCATLPSRAFTRRSEKAPGLIAKSSAVGSFQASNSVQHACVQLIRSLLK
EGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQTCLKQVIRSIKGKVLSASL
AGGSSSNSTALSTVSTKHERNACDDGYKTSGHEGRDLYSPFVMSKEGRDCQENPSHRRKN
AWELECGDACRSSTSCASTDSLLTNIKKEPNNLTAQNSLATKVCGKIQENRSSDLVAGKC
NMDDQCFSSNTEHSGFRRGRELEVKQKAESKTPLYLSAQTHLDSLSSRSCKSMQETSANS
VFQSRLLSTKQVSKEASLDSSNSSRKEGGVQAKEDDSTLLLGCNDTSLKKVSIEEKAGSS
LLSFFKRTTNVQTSNQEQPNSNDLDKYDCKNPFLETFCRDEISGCGYFPFSSENKRDMIR
PLSVKCESSDRLFEFSEYFRRENSSVGKKEENFVKTVSKDDDLSDSQVDRELSKLSLAAY
AKSVNFPVASNQESSVYHNVSDIKRKVKGSIRSSNEGQSTKCPSGGDHPSNQVIVISDSS
DEEKIVAEKEETKNKNENICAEPSLTSSSTSDSDTKRPSNSPGSPTLLDDCDSQYFEFET
EAEVYSAWQDTQAYAVETTQEYKQDRVSPAPETSNSDDCLNDDLNDWGYDVQYFSDDSME
EAASSIEKQAEDASYQKEADDTEEVMSSTLEESAGKEDAKGQLGKCADKDTTKGFPLDSK
VPEPTSSTSPISLASKLALKKNSTSPQKTMAKCKSAPAVQRSPKKHPIVKTAKNKTPLQS
TTERSQPGRSLPAVVPPKKVRQSPAPTSTAEKLGLKKGPRKAFDLSQPSLESLAQLRSHG
KAAGRIGVTQKKRTKQIEAQRLSVKHNKKLLACQDRQYLRAKRSVKNSAGSSGIRNKVAK
KCAKPVEQKPQSFEVGVVKESVENQRERKREETACPSASERKFESLSVEEVANASKMPHS
SDWNSKWESNSIVVPPVPMDSSLSSTAIEDGKDESSGKGCTVLPECELKTSKQNGCKSDE
SSDEGDDNLFLTQLDPVDMELCSQEESFQDAAIDSKTPEEMDVDESLQQNELSAVVKCKD
KDCMEQVEKPGEYCSKHPATSPGTDHVFAKPSLPPPKSKKPSTTKIFSTASSSRNAAFSK
DLEDVRKLPPPSKSKVNAAKQVVVRPPLYPKPAPSGNPTCKPASFSNVPQALSSNNVLQS
QNKHYDNASNISRRPGRETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFIYFGTPNDLLQ
TIVASVPVRFQGYNDYFNTFFPLMMLNAFETLAQEWVENQKVREKGYCFYLENFSADMNT
AHFTAHLRESDLARQLHPKEDDLILLKVHKEDTFGEESGMEYHTVNHVGLVTRFSRASGC
ASRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKALLLLSRSPLARPII
NPSYNDFCPRDLLVASGSAVSYKNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTG
KSKTIVGLLSRVLRENTRSEKTAREKNSKIKPNRFLVCAPSNAAVDELMKKIIIAFKEKC
QNKQEPLGNCGDIKLVRLGAEKSINNEVRGFSLDKQVEHRMKRKPGDCDQDIQKKKEALD
QKLDMLSRERAMHRCEKRESQMLNDEIGRLAKERQQLASQLKEVRVHSQKVQADIILESD
IICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPK
QLPPTVKSIKAQQYGYDQSLMARLQRHLEEQVQQNILHSLPVVQLTVQYRMHPDICLFPS
NYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKLVMELIRT
IKEKRKDLGLRRIGIITPYSAQKRKIQEQLDSVFKNNSPGEVDTVDAFQGREKDCIIVSC
VRANSSEGSTLPYVQANSTKGSIGFLSSLQRLNVTITRARFSLFILGRLQTLMEDKNWNH
LIQDAQKRGAIIRTTEKNYKKEALRILKLRSPGQAPAKGGTMTSPVVQAGSSSGKKSEPG
NSGNSPQELAAGPGHAVPQGSRGPSQPAGTPAADSNRGSAPASVGAPAADSRRGSAPAPS
GAADSRRGSAPASVGAPAADSRRGSAPAPSGAADSRSGSAPAPSGAAALGAVPEKPRDPR
LASLASRTEAKGKEQPLKGSHRSAQSNPGSAAQQGLAVCSAARDQVCRTENTKKAQQTAG
QCNVLPPAPHTAQHEGDRRAAVSKSASRAPSEGGQSSSSEWNKDSRGLSRRPSQESPENT
ESSSAKRRKFFH
NT seq
8319 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcacacagagtggtgctgacaccaccgactttctgaaccac
tatgctgctcaaaggctgtcccaggaagattttaaaggatccaacgatgacctctgttac
tgcctggagtgtgtggttcagtatcacaaagcaagggaagcatgtccaagactgcatgag
gacttgtgggacttggaaacctcccgcctcattgcccacatggagaaatccatgaacgaa
gaaacaggagaagatgagttatttctggttgatgagcatggggagacgcctctgtctggt
tatgtgggcccaaattttgagaacaacctgcgagtgcccattctggaaatactgaaatac
ccatatctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctttgcagactg
gaactaagtcaagactcctttcaggtctttgagaaatacccaggaatttatctctttttg
gtacacccaaatgaggtgattcgtcgatgggccatcctaacagcaaggaatttaggaaag
gttgacagggatgattactacgacttagaggaagtgctgacttgtttgttcagagttatt
gagctggggctttttgagaacccagatatttacagctcttcaatgtttgaaaagggtaaa
ctcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctggga
atttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggccca
gacaagcaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat
gattccactgaccccttctggcctgccctgcactgtttcatggttattttggatcagctt
ggatctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac
agtgtcagctacaacaatgaaatcaaaaacattcgcagtagctttaggaggacaaaagct
gaaccagagtcagactacggtgatgatatgatttcttgcagtcagattgtgtataattat
aacacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtactgc
cccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggcaga
gacatgcgtgtccatcacggcacattcctctggttcatcccttttgttcagtcccttatg
gatctcaaggacctgggtgtagcctatatagttgaggtcatccactacctctgctcagaa
atcaaagatatcctcatagaaagattccaggagtgcgacaaaatctcagagttcttcctc
ctcatcttggtgtccattgttgagctacacagaagtaagaagtgcctgcatttgctgtgg
atcagctcccaggaatgggtggaggcagtggtgaagtgtgccacacttccaagcagagcc
ttcactcggcgcagcgagaaggcgccggggctgattgccaagagctcggctgtggggtcc
ttccaggcctccaactcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag
gagggctaccagatcggccagcacgccctgtgcaagcagtacctggacaaactcaacctc
ctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggagctg
caaacgtgcttaaagcaagttataagaagtataaagggcaaagtactgagcgcctctttg
gctggagggagcagctcaaactcaacagctttgtcgactgtctctacaaagcacgagagg
aatgcgtgtgatgatggatacaagacgagtgggcatgaggggagggacctttattcacca
tttgtcatgtcaaaggaaggcagagattgtcaagagaacccttcccataggagaaagaat
gcctgggaattggaatgtggagatgcatgtagaagttcaacatcttgtgcatccacagac
agcctcttgacgaatattaaaaaggagcctaataacttgacagctcagaactctttggca
acaaaagtatgtgggaaaattcaggaaaataggagctctgatcttgtggcaggcaaatgc
aatatggatgatcagtgcttcagttcaaatactgagcattcaggtttcaggagaggaaga
gagttagaagtgaaacagaaagcagaatccaaaacaccactatatctgtctgctcagact
catcttgattctctgtcttcaaggagttgcaaaagtatgcaagagacaagtgcaaacagt
gtgttccagtccagactgctctccaccaaacaggtgtccaaggaagcatcactggattcc
tctaactcctctagaaaggaaggtggtgtgcaagcaaaggaagatgacagtactttgctt
ttagggtgtaatgacacctcactgaaaaaagtatcaatagaagaaaaagcaggttcatca
ttgctatctttctttaagaggaccactaatgtgcaaacttcaaaccaggagcagcctaat
tcaaatgacttggataaatatgactgcaaaaatccatttttggagaccttttgtagggat
gagatttcagggtgtggttattttccatttagctctgaaaacaagagggatatgatcagg
ccactgtcagtgaagtgtgaatcaagtgacaggttgtttgagttttcagaatatttcagg
agggaaaacagttcagtgggaaagaaagaggagaattttgtgaagacggtttctaaagat
gacgatttatcggactcccaggttgatagagagctcagtaaattatctttagctgcttac
gccaaaagtgttaattttcccgtcgcatccaaccaggaaagctcagtgtaccacaatgta
tctgatattaaaaggaaagtgaaaggttctattagatcttccaacgagggccaaagtacc
aagtgtcccagtggtggagatcaccctagcaatcaagtcattgtaatttcggactcttct
gatgaagaaaaaattgtggctgagaaggaggaaacaaaaaacaagaatgaaaatatatgt
gcagagccatctttaacttccagcagcacttctgatagtgacactaaaagaccctcaaac
tctccaggctctcccacgttactggatgactgtgattctcagtactttgaatttgaaaca
gaagctgaggtttattcggcttggcaagatactcaagcgtatgctgtggaaacaacacag
gagtataaacaagatcgtgtttcaccagcacctgagacaagtaattcagatgattgcctg
aatgatgacttaaatgactggggctatgatgtgcagtactttagtgatgactccatggaa
gaggcagcaagctcaatagaaaagcaggcagaagatgcttcttatcagaaagaagctgat
gatacagaagaagtgatgagttcgaccttggaagaatcagctggcaaggaagatgcaaaa
ggtcaactggggaaatgtgcagacaaagatactactaaaggcttccccctggactcaaaa
gtgcctgaacccacatcttctacatctcccatctcattagcttcaaagttggcccttaag
aaaaatagcacaagcccacagaagaccatggcaaagtgtaaatcagcaccggctgttcag
agaagtcctaaaaaacatcccattgttaaaacagccaaaaataaaacaccactccaaagc
acgacagaacgttctcagcctggcaggtcactgcctgctgtggttcctccaaagaaggtt
cggcagagtcctgctccaacatccactgcagaaaagcttggcctaaagaagggcccccgc
aaggcgttcgacttgtcccagccctccctggagagcctggctcagctgcgcagccacggc
aaagctgcaggcaggattggagttacacagaaaaagaggaccaaacagatcgaggcccag
cgtttgtctgtaaaacataataaaaaactgctggcctgccaagaccggcagtatctaagg
gccaaaagaagtgtgaaaaattctgcagggagttcggggattagaaacaaagttgccaaa
aagtgtgcaaaacctgtagaacaaaagcctcaaagttttgaagtgggagttgttaaagaa
tctgttgaaaaccaaagggagagaaaaagagaagagactgcttgtccttctgccagtgag
agaaaatttgagagtctctctgtggaggaggtggcaaatgcctctaaaatgcctcattct
tcagactggaacagcaagtgggagagtaacagtatcgtggttcctcctgtccctatggat
tcaagtctctcttccactgcaattgaagatggtaaagatgagtcttcaggaaaaggttgc
actgtcctgcctgagtgtgagttgaaaacttcaaagcaaaatgggtgtaaatcagatgaa
agcagtgacgaaggtgatgataatctgtttttaacccagttagatcctgtggatatggag
ttatgttctcaggaggaaagttttcaagatgctgctatagatagtaagaccccagaggaa
atggatgttgatgaaagccttcaacagaatgagctctcagctgttgtgaaatgtaaggac
aaagactgtatggaacaggtggaaaaacctggagagtactgcagtaaacacccagccacc
agcccagggacagatcacgtgtttgccaagccttctctcccaccacctaaaagtaagaag
ccttccactaccaaaattttcagcacagcaagttcttcacggaatgcagccttcagcaaa
gatcttgaagatgtcagaaagttgcccccaccttcaaaaagcaaagtgaacgcggccaaa
caagtggtggtcaggccacctctgtatccaaaacctgcaccatcaggaaatccaacatgc
aaacctgcaagtttcagtaacgtacctcaagcccttagttccaataatgttctccagtca
caaaataaacattatgacaatgcttcaaatatttccaggaggcctggccgagaaacctac
tcctcttttcttggcgctcagcagcgcgattacagcatttttgttaaccaagtcctaaag
tggacttacgaaatgtttgcaaacttcatctactttggaactccaaatgatcttctgcag
actatagtagcctctgttcctgtccgatttcagggctacaatgactattttaacacattt
tttcccttgatgatgctcaacgcctttgaaacactggcacaagaatgggtagaaaaccag
aaagtaagagagaaaggttattgcttctacttagagaacttttctgctgatatgaataca
gcacattttacagctcatctacgagagagtgatttggcaaggcagcttcatccaaaggag
gatgacttaatccttttgaaggtccacaaggaggacacttttggggaagaaagtgggatg
gagtaccacacagtgaatcatgttggccttgtgacacgtttttctcgtgcatctggctgt
gcaagcagacaaaaagaacagcaaactgcctgtcatcttactgtgcaaacccgaggcaat
ttgtcattcttcatccataagcaagtgaagtgtgtggtggttggctccctggtgaccaca
cacagaaagttcaaagctctgctgctgctgagcaggagccccctggctagacccatcata
aatccaagctacaatgatttctgtcccagagatctgcttgttgcctcaggaagtgctgtt
tcatataagaatgaatacaatgaagatcaaaagagagccattgagacagcttatgccatg
gtaaagcaacacccaggacttcccaagatctgccttatccatggaccacctggcacaggg
aaatcaaaaactattgtaggactcctatcccgtgttttgagagaaaacactaggagtgag
aaaacagctcgggaaaaaaattccaagattaagccaaaccgttttttagtttgtgcacca
tcaaatgctgctgttgatgaactcatgaaaaagatcatcattgcatttaaggaaaaatgc
caaaacaaacaggagcctttgggaaattgtggtgatatcaaattagtgcgacttggtgct
gaaaaatcaatcaacaatgaagtgcggggattcagcctggataagcaagttgaacacaga
atgaaacgaaagccaggtgactgtgaccaggacattcagaagaagaaagaagctctggat
cagaagctggacatgctctctcgagagcgtgccatgcacagatgtgagaagagagagagt
caaatgttaaatgatgaaattggcagacttgcaaaggagagacaacaactcgcttctcag
ctaaaggaggttcgggtgcactcccagaaagtgcaggcagacatcatcctggagtctgac
atcatctgctgcacgctgagcaccagcggggggagcctgctggaatcggcgttctcccgg
cagggcctcgatcccttcagctgtgtcatcgtggatgaggcaggacagtcctgtgaggtg
gaaacactgattccactgatccatcgctgtaataaacttgtccttgttggagatcccaaa
cagctccctcccactgtcaaatctataaaagctcagcagtatggctatgaccagtctttg
atggcccgtctgcagaggcacctggaggagcaagtgcagcagaacatactgcacagcctg
cctgtggtgcagctgaccgtgcagtacaggatgcacccagacatctgcctcttcccatcc
aactatgtttatggcaggactctaaaaactgccaaggcaatagaggagaacagatgttct
tcagaatggccattccagccctacctgatttttgatgtagctgatggtcgtgaggagcga
gacaatgactcttacagcaatcctcgggaagtgaagctggtgatggagttaattagaaca
attaaagaaaaaaggaaggatctggggcttcgtcgcattggaataattaccccttacagt
gcacagaaaaggaaaattcaggaacaactggacagtgtgtttaagaataacagcccagga
gaagtggacacagtggatgcgttccagggccgagagaaggattgcatcatcgtgtcctgc
gtgcgggcaaacagctctgagggctccactctgccatatgtgcaggcaaacagcaccaaa
ggatccattgggtttctgtcgagcctccagcgactgaatgtcaccatcacccgagcccgg
ttcagcctcttcatcctgggccggctgcagacgctcatggaagataaaaactggaatcac
ttgattcaggatgctcagaaaagaggcgccattattaggacaacagaaaaaaattacaag
aaagaggctctcaggattttgaagctcaggtcaccaggacaggccccagccaaaggaggg
acaatgacatctcctgtggtgcaggctggttcttccagtggcaagaagagtgagcctgga
aattctgggaacagcccacaggaacttgctgctggccctggccatgcagtgcctcaagga
agccgagggccctcacagcctgcagggactccagctgcagattccaacaggggcagtgct
cctgcatccgtgggggctccagctgcagattccaggaggggcagtgcccctgcaccatca
ggagctgcagattccaggaggggcagtgcccctgcatccgtgggggctccagctgcagat
tccaggaggggcagtgcccctgcaccatcaggagctgcagattccaggagtggcagtgcc
cctgcaccctcgggggctgcagcacttggtgctgttcctgagaagccacgggacccaagg
ctggcaagcctggccagtcgaactgaagccaaaggcaaggagcagcccttgaaaggcagc
catcggtcagcccagagcaatccaggatcagcagcacagcaaggcctggctgtgtgctca
gctgccagggatcaggtttgcagaacagaaaacaccaagaaggcccagcaaacagcaggg
cagtgcaatgtgcttcccccagcccctcacacagcccagcacgagggtgaccggagagca
gctgtgtccaaaagcgcttccagagcccccagtgaaggaggtcagagcagcagcagtgag
tggaacaaagactctcgtggtttgtcaaggagaccatcccaggaatcaccagagaacaca
gaatcaagctctgccaagagaagaaagttctttcactga
DBGET
integrated database retrieval system
