Taeniopygia guttata (zebra finch): 100217653
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Entry
100217653 CDS
T01082
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100217653 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tgu01009
]
100217653 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tgu04515
]
100217653 (PCDH20)
Protein phosphatases and associated proteins [BR:
tgu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100217653 (PCDH20)
Cell adhesion molecules [BR:
tgu04515
]
Cadherins
Protocadherins
100217653 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
100217653
NCBI-ProteinID:
XP_002196691
Ensembl:
ENSTGUG00000012481
LinkDB
All DBs
Position
1:52633349..52640614
Genome browser
AA seq
915 aa
AA seq
DB search
MEPPGGRGCSSARGSLQHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLAR
DLRLPTAGGQLAASLLPPLSFTLASHGLGGQYVHLDNRSGELHTSAVEIDREALCVESSG
ATIFGGSIAISSSSPSPESCLLLLDVLVLPQEYFRLVKVKIAIHDVNDNAPRFPVPHIRL
SVPENAPVNTRLAIEHPALDPDMGTNGVQTYRLRDNYGVFTLDVEENENGERTPYLIVMG
ALDRETQDEYVTVIVAEDGGTPPLVGSATLTIGISDINDNCPQFNDSQLNVTLYGNSSLG
THVATVHAVDMDLGSNAQITYSYSQKVPQPSRDLFHLNESTGAIILSTKVDGDTPRLHRL
IILGNGPGCIPAVITVLVTIIKVMMRPPEVVPRFIANEVEGVVYLKELEPINTPIAFFTI
KDPDEKYKVSCYLDGDGPFRLSPYKPYNNEYLLETTKPLDFETQQLYEISVVAWNSEGFH
VKKVVKVQVLDDNDNSPVFSEQLIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGP
DAPSYFALDKTTGVLTVSTQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNS
PRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRA
KVSLDREQQSSYILWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLP
STLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYG
LYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDISVEEKQPQISIEP
THKKMESASCMPTLVALSIISLGSIALVTGMGIYICLRKERKHHRADENLEVQIPLNGRI
NLHMLEKKPMEISNI
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggagcccccgggcgggcgcggctgctccagcgcccgcggcagcctccagcacttgctc
ctcttcctgctcttcgttgggcctttcaactgctttgccagttacagccgtgccactgag
ctcttctacagcctcaacgaggggctgcctgctggggtgctcatcggcagcctggcccgt
gacctgcggctcccaacggctggtggccagcttgctgcatctctgctgcccccactttcc
ttcaccctggcttcccatggcttgggggggcagtatgtgcatctggacaaccgctctgga
gagctgcacacctcagcagtggagatagaccgggaagctctctgcgtggaaagcagcggg
gccaccatcttcgggggatcaattgccatctcctcttcctccccctcaccagagtcatgc
ctactgctgctggatgtgctggtactgccacaggagtactttcgcctggtgaaggtaaaa
attgctatccatgatgtcaacgacaatgcgccccgcttccctgtgccccacatccgtctc
tcggtgcctgagaatgcacctgtgaacacccgcctggctattgagcaccccgcccttgac
cctgacatgggcaccaatggtgtccagacctaccgcctgcgagataactatggtgtcttc
accctggatgtggaggagaatgagaacggggagaggactccctacctgattgttatgggg
gcactggacagggagacacaggacgagtatgtgacagtcatcgttgctgaggatgggggg
actcctccgcttgtgggcagtgccaccctcactattggcatcagtgacatcaatgacaac
tgcccccagttcaatgactcgcagctcaatgtcactctttatgggaattccagcctaggg
acacacgtggctactgtccatgcggtggacatggaccttggatccaatgcccagattacc
tactcctatagccagaaggtcccccagccatccagggacttgttccatctgaatgaaagc
acaggagccatcatactctccactaaagttgatggggacactccaaggctacacaggctg
atcatactgggcaatggtcctggctgtattcctgctgtgattacagtgctggtgaccatc
atcaaagtcatgatgaggccacctgaagttgttcctcgtttcatagctaatgaagtggaa
ggggtggtctacttaaaggaacttgagcctatcaacacacctatagcattttttaccatc
aaagaccctgatgaaaaatacaaagtcagttgctatttggatggtgatgggcctttcaga
ctttcaccgtacaagccatacaacaatgaatacctgttggagaccacgaagcctttggac
tttgagacacagcagctgtatgaaatctccgtagttgcatggaactcggaaggatttcat
gtcaagaaagttgtcaaagtacaggttctggatgacaacgacaattcaccagttttctct
gaacaactgatagaattgtccatcgaggagaacaatgttcccaatgcttttttgaccaaa
ctgcatgctactgatgctgacagcggagaaagaggacaagtgtcctatttcttaggtcct
gatgccccttcctattttgctttagataaaaccacaggagttcttacagtttccacccag
ctggacagagaagaaaaagagaaatacagatacactgtcaaagcagtagattctggattc
cctccaagagaatcaatagcaactgtcaccatcactgtattggataaaaatgataacagt
ccaagatttattaataaggatttcagcttttttgtgccagaaaactttccaggttttggt
gaaattggagttataagtgtgacagatgctgatgcagggcaaaatggatgggttgccctt
tcagttctgaatggaagtgatatttttgttatagatactggaaaaggagttttgagagct
aaagtctccctggacagggagcagcaaagctcctacattctttggattgaagcagttgat
ggcggtgatcctgccctgtcttctacagcaaaaataactatccttcttctggacataaat
gacaaccctcctttggtcttgtttcctcagtctaatatgtcttacttgttagtccttcct
tctacccttccgggctctcccatcactgaggtctatgctgtcgataaggacactggcatg
aatgcagtcatagcttacagtattataggaagaagaggccctcggcccgagtcgtttagg
attgaccccaaaactggtaatatcaccttggaagagtcactgatgcaaaatgactacggc
ctctatcggctgcttgtaaaagttagtgatcacggctacccggaacctctccattccact
gtcatggtgaacctttttgtcaatgatactgtcagcaatgagagctacatcgaaagtttg
ttaaggaaggagcctgatatcagtgtagaagaaaagcagccacaaatatccatcgagcct
acacataaaaaaatggagtcagcatcctgcatgcctaccttggtagctctttcaataata
agcttgggttcaattgctttagtaacagggatgggaatttacatttgtctaagaaaagag
agaaagcatcacagagcagatgaaaacttggaagtacaaatcccattaaatggaagaatt
aacctgcacatgttggagaagaaaccaatggagatttctaacatataa
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