Taeniopygia guttata (zebra finch): 100217721
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Entry
100217721 CDS
T01082
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tgu03036
]
100217721 (CHD5)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100217721 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
100217721
NCBI-ProteinID:
XP_030145405
LinkDB
All DBs
Position
21:complement(3399820..3422919)
Genome browser
AA seq
1959 aa
AA seq
DB search
MRGPPAARDLLDDADNEEDVSEEDDGVLEALDEFFAEDQVVVQKKKKSKKLKDGKAAKIK
RRKKEGSNDEMSENEEEIEEKSESEGSDYSPNKKKKKKLKDKKEKKPKRKKKDEEEDDNE
DGSLKEPKSSAQLMEEWGLDDVDYVFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKM
MTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPALPASPQHSALPAVVRKAKT
KEGKGPGVRKKIKGSKDGKKKGKGKKMAGLKFRFGGIPSKRKKGSSSEEEEREESDFDSA
SINSSSMRSECSAGLGKRGKKRKKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRA
YHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKEEEEEEEDGGEEEEEDDHMEFCRVCKD
GGELLCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWAWREPPAAP
LPPVLPAADPQPVLPPPKVLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQ
RKNDMDEPPAFDYGSGDEDNQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFD
KKGDIHYLIKWKDLPYDQCTWEIDDIDIPYYENLKLLYWNHRELMLGEDTRPLKKLNKKG
KKLKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTIL
ADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGD
KESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWAC
LVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG
FLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFI
LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSS
GKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAI
DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV
MIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKD
DVEGMVSQGQRIAMPDAVTPFSDTLSTKGGAATPGMKKKHGSTPPGDNKDVDDSSVIHYD
DAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPD
YWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDELSDNQSEYSIGSED
EDEDFEDRPEGQSGRRQSRRQLKTDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMR
WGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ
HVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLLLEGPESKRSSEVVSSDPNTPVPASPAHT
HTGPGALADKAEAQLGFHEEKDPVELKPRKVSDSQVPASAEVESEEHRESCESKERPRKE
KQEDCEKAEPSSEPLVKGLFPPADEGIQEQEKPLEKAELSSSQGKGEDKEVKPEDGKEEE
KEPSDAQQNGDKEEEEDGKKDDRNMNFRFMFNIADGGFTELHTLWQNEERAAMSSGKIYD
IWHRRHDYWLLAGIVTHGYARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFK
LLEQALVIEEQLRRAAYLNMTQDPSHPAMALNARLAEVECLAESHQHLSKESLAGNKPAN
AVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLATRGGDPAAQG
SFGSAPIFNNSFGPSFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccgccggccgcccgggacctgctggacgacgcggacaacgaggaggacgtg
tcggaagaagatgatggggtgctggaagcattggatgagttttttgcagaagaccaagtt
gtggtacagaaaaagaagaaatccaagaagctgaaagatggcaaggctgccaaaatcaag
aggaggaagaaggaggggagcaatgatgaaatgtcagaaaacgaagaggagattgaggag
aaatcagagagtgaagggagtgactattctcccaacaaaaagaagaagaaaaaactgaaa
gacaagaaggagaaaaagccaaaacgaaagaagaaggatgaagaggaggatgacaatgag
gatggaagtttaaaggagcccaagagctcggcccagctcatggaggaatggggtctcgat
gatgtagattatgttttctcagaagaggattaccatactctgacgaattacaaggctttc
agccagttcctcaggcctctgattgccaagaagaaccccaagatccccatgtccaagatg
atgacggtgctcggtgccaagtggcgagagttcagcgccaacaaccccttcaagggcagc
tcggcggcggcggcggcggcagccgtggctgcggctgtggagaccgtcaccatcgccccg
gcgctccctgccagcccccagcactctgccctgcccgctgtcgtcaggaaggccaagacc
aaggagggcaagggtccaggtgtacggaagaaaatcaagggctccaaagacgggaagaaa
aaggggaaagggaaaaagatggcaggcttgaaatttcggtttggaggaatccccagcaaa
aggaaaaagggctcctctagcgaagaggaggaacgggaagaatccgactttgacagcgcc
agcatcaacagctcctccatgcgctccgagtgctcggctggcctggggaagagagggaag
aagaggaaaaagaaaaagaggattgaagagggggacgggtacgagaccgaccaccaggac
tactgcgaggtgtgccagcagggcggggagatcatcctgtgcgacacctgcccccgcgcc
taccacctggtgtgcctggaccccgagctggagaaggcccccgagggcaagtggagctgc
ccccactgcgagaaggagggcatccagtgggagccgaaggaggaggaggaggaggaagag
gatggtggcgaggaggaggaggaggatgaccacatggagttctgccgggtgtgtaaggac
ggaggggagctgctgtgctgtgatacctgcccgtcctcctaccaccttcactgcctgaac
ccgccgctgccggagatcccaaacggtgaatggctctgcccacgctgtacatgccctccc
ctgaagggcaaagtgcagcgcatcctgcactgggcctggagggagccgccggccgccccg
ctgccgcccgtgctgcccgccgcggacccacagccggttctgcccccgcccaaggtgctg
gaggggatcccggagcgcgagttcttcgtcaagtgggcaggcctctcctactggcactgc
tcctgggtcaaggagctgcagctggagctctaccacaccgtgatgtaccgcaactaccaa
cggaagaacgacatggacgagccaccggcctttgactacggctctggggacgaggacaac
cagagggagaagcggaagaacaaggacccccagtatgccaagatggaggagcggttctac
cgctatggcatcaaacccgagtggatgatgatccaccgcatcctgaaccacagctttgat
aaaaagggagacatccattacctgatcaagtggaaggacctgccctatgaccagtgcacc
tgggagattgatgacatagacatcccctactatgagaacctcaaactcctctactggaac
cacagggagctgatgctgggggaggacacgcgccctctgaagaagctgaacaagaaaggg
aaaaagctgaaagaggagaagctggaaaagcctccagaaacacctcttgtggatcctacg
gtgaagtttgacaagcagccgtggtacatcgatgccacgggaggcacgctgcacccttac
cagctggaagggctgaactggctgagattctcctgggcacaagggacagatacaatcctg
gctgatgagatggggctggggaagacggtgcagactattgtgttcttgtattccctgtac
aaggagggccactcgaaagggccatacctagtcagtgcccccctgtccaccatcatcaac
tgggagcgtgagtttgagatgtgggcacctgacttctacgttgtgacctacacgggggac
aaggagagccggtcggtcatccgggaaaatgagttttcttttgaagacaacgccatccgc
agcgggaagaaggtcttccggatgaagaaggaagcccagatcaagttccatgtcctgctc
acgtcctatgagctgatcaccattgaccaggcagtgctgggctccatagagtgggcctgt
ctggtggtggatgaagcacacaggctgaagaacaaccagtccaaattcttcagagtactg
aatagctacaagatcgattacaagctgcttctcacagggactccgctccagaacaacttg
gaagagctcttccacctgctcaatttcctgactccagaaaggtttaacaacctggagggg
ttcctggaggagtttgcagacatctccaaggaggaccagatcaaaaagctccatgaccta
ctgggtccccacatgctgcggcggctcaaggccgatgtgttcaagaacatgccggccaag
acggagctgatcgtgcgcgtggagctgagccagatgcagaagaagtactacaaattcata
ctgacaaggaacttcgaagccctgaattcgaaaggtggtgggaaccaggtctcactgctc
aacatcatgatggacctgaagaagtgctgcaatcacccctacctattccctgtggcagct
gtggaggcccctgtgctgcccaatggatcttatgatgggaattctttggtcaaatcttct
gggaaactgatgctgctccaaaagatgctgaagaagttacgggatgggggtcacagagtt
ctgatcttctcgcagatgacaaagatgctggatttgctggaggatttcctggagtacgaa
ggctacaagtacgagcgcattgacgggggcatcaccggcggcctgcgccaggaggccatc
gacaggttcaatgctcctggggctcagcagttctgcttcctcctctccacccgtgccggt
ggtctgggcataaaccttgctacggccgacactgtcattatctatgattctgactggaat
ccccacaatgacatccaggcgttcagcagggctcaccgcatcgggcagaacaagaaggtg
atgatttaccgcttcgtgaccagggcctctgtggaggagcgcatcacccaggtggccaaa
aggaagatgatgctcacccacctggtggtccgccccgggctcggctccaagtcgggctcc
atgaccaaacaagaactggatgacatcctcaagtttgggacagaagaactcttcaaggat
gatgtggagggcatggtgtctcagggacagcggattgcaatgccagatgctgttaccccc
ttctcagacacactgtcaacaaaagggggtgcagcaacccctggcatgaaaaaaaagcat
ggtagcaccccaccaggtgacaacaaggatgtggatgacagcagcgtgatccactacgac
gacgctgccatctctaagcttttggaccggaaccaggatgcgactgacgacacggagctg
cagaacatgaatgagtatctcagctcctttaaagtggctcagtatgtcgtgagagaagag
gacggtgtggaggaggtagaacgggagatcatcaagcaagaggagaacgtggaccctgac
tactgggagaagctgctgcggcaccattatgagcagcagcaggaggatctggccaggaac
ctggggaaagggaagagaatccgcaagcaggtcaactacaatgacacctctcaggaggac
caagagtggcaggatgagctctctgacaaccagtcagagtattccattggctctgaggat
gaggatgaagactttgaagacaggccagaaggccagagtggcagaagacaatcacggaga
cagctgaagactgacagagacaaacctctccctcctttgctggcaagagttggggggaac
atcgaggttctgggcttcaacgcccgtcagcgcaaggcattcctgaatgccatcatgcgc
tggggaatgccaccccaggatgccttcaactcccactggctggtccgggatctgcgaggg
aagagcgagaaggagttcagggcctacgtgtctctcttcatgagacatttgtgtgagccc
ggggccgacggcgccgaaacctttgcggacggcgttccccgggaggggctgtctcgccag
cacgtgctgactcgcatcggggtcatgtcactagtaaggaagaaggttcaggagtttgag
catgtcaatgggaagtacagcaccccagacctgcttcttgagggcccagagagcaagaga
tccagcgaggttgtgtcttcagatcccaacacgcctgtcccggccagtccagcacacaca
cacacaggaccaggggccctcgcagacaaagcagaagcacaactggggttccatgaggaa
aaggacccggtggaactgaagcccagaaaggtgtctgacagccaggtacctgcaagtgcc
gaggtggagagtgaagagcaccgggaaagctgtgagagcaaggagaggccaaggaaagag
aagcaagaggattgtgagaaggctgagccttcttctgagcccctggtgaaaggcctgttc
cctcctgcagacgaggggattcaagagcaagaaaagcctttggagaaggcggagttgagc
agcagccaggggaagggggaggataaagaagtcaaaccagaggatggcaaggaagaggag
aaggaaccaagcgatgcccagcaaaatggtgacaaagaggaagaggaggatggaaagaag
gatgacagaaacatgaacttcagattcatgttcaacattgctgatggtggcttcacagag
ctgcacacgctgtggcagaatgaggagagggctgccatgtcctcaggcaagatctacgac
atctggcaccgccgacatgactactggctgttggcaggaattgtcactcatggctatgcc
cgctggcaggacatccagaatgacccacgctatgtgatcctgaacgagcccttcaagtca
gagatacacaaggggaactacctcgagatgaagaacaagttccttgctcggcgttttaag
ttgctggagcaggccctggtgatcgaggagcagctgaggagggcggcgtacctcaacatg
acccaagaccccagtcacccggccatggcactgaacgcacggctggcagaagtggagtgc
cttgctgagagccaccagcacctctccaaagagtccctggctgggaacaagcctgccaac
gctgtcctgcacaaggtgctgaaccagcttgaggagctgctgagtgacatgaaggctgat
gtgacacgcttgccctccatgctgtcacgcatcccgcccgtggctgcccggctgcagatg
tcagagcggagcatcctcagccgcctggccacccgtggaggggatccagctgcccagggc
tcctttggctctgctccgatcttcaacaacagctttgggccaagtttccgtggtccgggg
ccaggtgggattgtcaactacagccagatgcctctgggaccctacgtgactgatatttag
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integrated database retrieval system
