Taeniopygia guttata (zebra finch): 100217821
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Entry
100217821 CDS
T01082
Symbol
PASD1
Name
(RefSeq) circadian clock protein PASD1 isoform X1
KO
K09026
neuronal PAS domain-containing protein 2
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100217821 (PASD1)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100217821 (PASD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HLH
PAS_9
TED_2
Motif
Other DBs
NCBI-GeneID:
100217821
NCBI-ProteinID:
XP_030128525
Ensembl:
ENSTGUG00000004465
LinkDB
All DBs
Position
4A:complement(11835778..11889331)
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AA seq
834 aa
AA seq
DB search
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELCTMLQGHGHPLKMDKSTILQRTIDFLQK
QKEITAQTEACQIRQDWKPSFLSNEEFTQLMLEALDGFLIALTTDGIIIYVSDSVSSLLG
HLPSDLVDQNILNFLPEGEQSEVYKLLSPHVLMTDPVAADFLNAEKQIEFCCHLARGSLD
PNEPLMYEYVKFVVDFKYFTHVPTPSCNGFESAIARAFRSATEEQICLVATVRLVTPQFL
KELCNVEEPCEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHADDLELLAR
CHEHLMQFGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHLVVSYAEVRA
ERRRDLGLEESSIELASSSLKSHSSYLEVGQCGSSQDASREGVSLSSHSSRRSSHTTLSD
STSTSSMRRTDTSTPTRPSVPGAPGDKAALRLAAAGSAQAIATPQARGEHPSQHPMAQLA
VPSQHPVVPMYHFPTQLGMMHQLKEQLEERTRILQADIKTQQEELHVIKEQLQLVQDSNL
QMLMQQPIPVILNSVQQPSPRRPPPQGTPRQTTAKKSQQPALTGTKHYCSTHLLSPHPFL
RDPCGTAPQVQQQKQQHPVRGSQGQQTSVPGQASISVPFYNNPMVFPQAHPIAVAAQGPT
DSSERQPPADYSQDRSLRMLLDQSIQAMMPAANSSCQPVQSSASRQQGKFVAEQQSLPPP
AQGQPVTCSTVRPPAPPPIFSPSLMIPHSSFASHQANTQLHLHQWPQQQVQQHRLYLQMP
GPELVPGAPTQRIFQPPHTPQQNPLSYFLHPQQQSHHTQGQPCNLPDLPEMQLP
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatgagaaggacagggcaaagagggcatcacgcaacaaatctgagaagaag
aggagggaccagttcaatgtcctcattaaggagctttgcacgatgctgcagggccacggc
caccctctcaagatggacaagtccacaatactgcagaggaccatcgacttcctacagaag
cagaaagaaatcacagcacagacagaagcctgtcagattagacaagattggaagccttca
tttcttagcaacgaggagttcacccagttgatgttagaggcactagatggctttctcatt
gctcttaccactgatgggattattatttatgtatctgacagtgtttcgtctctgctggga
cacttaccgtcagatttggtggaccaaaatatattgaactttctgcctgagggggagcag
agcgaggtgtacaagctcctttctccacatgtgctcatgacagatcctgttgcagctgat
tttctaaatgcagaaaaacaaatagagttttgttgccatttagcaagaggcagcttagat
ccaaatgaacccctgatgtatgaatatgtgaaatttgtagtggattttaaatattttact
catgtgcctacaccctcctgtaatggctttgagtcagctattgcacgggctttcaggtca
gccacggaggagcagatctgcctggtcgcgactgttcgtctggtcacgccgcagttcctg
aaggagctttgcaacgttgaagagccatgtgaagaatttacatcaaggcatagtttagaa
tggaagtttttattcttggaccacagggctccacctattataggatatttaccctttgag
gttctgggaacatcagggtatgattactaccacgcagatgacctggagcttcttgctagg
tgccatgaacacttgatgcagtttggaaaaggcaaatcctgctactatcggttcctgacc
aaagggcagcagtggatatggctgcagacacactactacatcacctaccaccagtggaac
tccaagcctgagttcatcgtttgcactcatctggtagttagttatgcagaagttcgggct
gagagaaggcgagatcttggcctcgaagagtcatcaattgaactggcatcctcttctcta
aagagccacagcagctacctggaggtggggcagtgcggcagcagccaggacgccagccgg
gagggagtgtcgctgtcctcgcacagctcccggcgctcctcgcacaccaccctgtccgac
tccacctccacgtcgtccatgcggcgcacagacaccagcactcccacccggccgtcggtg
ccgggggctccgggggacaaggcagccctgcggctggcagcggccggcagcgcgcaggcc
atagccactcctcaagcccgtggtgagcacccctctcagcaccccatggctcagctggca
gtgccctcccagcaccctgtggtgcccatgtaccatttccccacccagctggggatgatg
caccagctgaaagagcagctggaggagaggactcgcatcctgcaagctgacatcaaaacg
cagcaagaggagctccatgtcatcaaggagcagctccagcttgtgcaggactccaacctg
cagatgctgatgcagcagccgatccccgtcatcctgaactccgtgcagcagcccagcccc
cggaggccgccgccgcaggggacgcccaggcagaccacggccaagaagtcacagcagcca
gccctgacggggacaaagcactactgcagcacccacctgctgtcaccgcacccattcctc
agggacccctgtggcacagccccccaggtacagcagcagaagcagcagcacccagtgaga
ggaagccaaggccagcaaacgtctgtgccagggcaggccagcatctccgtgcccttctac
aacaaccccatggtgttcccccaagcacaccccattgccgtggctgcacagggcccgact
gacagcagtgagaggcagcctccagctgactacagccaggacaggagcctcaggatgctg
ttggatcagtccatccaagccatgatgcccgcagccaacagcagttgccagcccgtgcag
agcagtgccagcaggcagcaaggaaagtttgttgcagagcagcagtccctgcctccccca
gcacaggggcagcccgtcacctgcagcactgtccgacctccagccccgccgcccatcttc
tccccgtcgctgatgatccctcactccagcttcgcttcccaccaggccaacacacagctt
cacctgcaccagtggccgcagcagcaggttcagcagcaccgcctctaccttcagatgcca
ggtcctgagctggtgccgggggctccgacgcagcgcattttccagccgccccacaccccg
cagcagaaccccttgagctacttcctgcacccgcagcagcagagccaccacacgcagggc
cagccctgcaacctgcctgacctgcccgagatgcagctgccctga
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