Taeniopygia guttata (zebra finch): 100218447
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Entry
100218447 CDS
T01082
Symbol
HMBOX1
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100218447 (HMBOX1)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
100218447 (HMBOX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_24
CUT
HTH_37
HTH_26
HTH_31
HTH_23
Motif
Other DBs
NCBI-GeneID:
100218447
NCBI-ProteinID:
XP_012428401
Ensembl:
ENSTGUG00000013324
UniProt:
H0ZSX0
LinkDB
All DBs
Position
3:321891..440467
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AA seq
455 aa
AA seq
DB search
MLRTFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTRHEILHALETLDRLDQEHSDK
FGRRSGYGGGSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
SNERLSAFNGKMSPTRYPLANSLAQRSYSFEASEEDLDIDDKVEELMRRDSSVIKEEIKA
FLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMR
PAPIPIEEPEWRQTPPPVTATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREE
IANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPG
GHSNSDDVDGNDYSEQDTWQVRNGEEEGRCSEGGREAEKVEEDRRICSKQDDSTSHSDHQ
DPISLAVEMAAVNHTILALARQGANEIKTEALDDD
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgctcagaacttttccagtagtcctgctggaaaccatgtctcactacacagacgagcca
agattcaccatagagcagatcgacctcctgcagcgcctgagacgcacgggaatgaccagg
catgagatcctgcacgccctggaaaccttggaccgtctggaccaagagcatagcgacaaa
ttcgggagaaggtctggctacggaggcggctcctacggcaacagcaccaacaacgtcccg
gcgtcttcctcgacggccacggcttccacgcagacgcagcactccgggatgtccccgtcc
ccgagcaacagttacgacacctccccacagccttgcactacgaatcagaacgggagggag
agtaacgagaggttgtctgccttcaatgggaagatgtcgcccacccgctaccccctggcc
aacagcctggcccagaggtcctacagctttgaggcttccgaggaggacttggacatcgac
gacaaagtggaggagctgatgaggagggacagcagtgtgataaaggaggaaatcaaagcc
ttcctcgccaaccggagaatttcccaagcagttgttgcacaggtaacaggtatcagtcag
agccggatctcccattggctgttgcagcaggggtcggacctgagtgaacagaagaaaagg
gcattttacagatggtaccagcttgagaagacaaatcctggggctacactaagcatgaga
cccgctcccatcccaatagaagagccagaatggagacagacgcctcccccagtcacagct
acctctgggaccttcagactacggcgaggcagtcggttcacgtggagaaaggagtgcctg
gctgttatggagagttacttcaatgagaatcaatatcccgacgaggcaaagagagaagaa
attgccaatgcctgtaatgcagttatacaaaaaccaggaaaaaagttgtcagatttggag
cgagttacctccctcaaagtgtacaactggtttgccaacaggaggaaggagatcaagaga
agagccaatatcgaagcagcaatcctggagagccatggaatagatgtacagagtccagga
ggtcactccaacagcgacgacgtggacggcaatgactactcagagcaggacacttggcaa
gtacgcaacggggaggaggagggacgatgttccgagggaggcagagaagcagagaaggta
gaagaagacaggaggatctgctccaaacaagatgacagcactagccatagtgaccaccaa
gaccccatttccttagctgtggagatggcagcagtcaaccacaccatcctggcgctggcc
cggcaaggagccaacgagatcaagacagaggctctggacgacgactga
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