Taeniopygia guttata (zebra finch): 100219002
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Entry
100219002 CDS
T01082
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100219002 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
100219002 (SF3B3)
03041 Spliceosome [BR:
tgu03041
]
100219002 (SF3B3)
03036 Chromosome and associated proteins [BR:
tgu03036
]
100219002 (SF3B3)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100219002 (SF3B3)
Spliceosome [BR:
tgu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100219002 (SF3B3)
Complex B
100219002 (SF3B3)
Complex C
U2 SnRNP specific factors
100219002 (SF3B3)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100219002 (SF3B3)
TFTC complex
100219002 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
100219002
NCBI-ProteinID:
XP_030138371
Ensembl:
ENSTGUG00000006082
LinkDB
All DBs
Position
11:13233719..13262086
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctaacgttgcagcgtgccacaggcattagctttgctatccatggc
aatttctcaggaaccaaacaacaagaaattgttgtttcccggggcaagatcctggagtta
ctccgccctgatcccaacacagggaaggttcacactctgctgaccgtggaagtgtttgga
gtcatccggtccctcatggccttcaggctgacgggggggaccaaggactacatcgtggtg
ggcagcgattcggggcgcattgtcattctggagtaccagccctccaagaacgtcttcgag
aagatccaccaggaaacctttggcaagagtggatgtcgcagaatcgttccgggccagtac
ttggctgtggacccaaagggccgtgccgtcatgatcagtgccattgaaaagcagaagttg
gtgtatatcctgaacagagatgctgctgctcgactcaccatttcctccccactggaggcc
cataaggccaacaccttggtctaccatgtggtgggagttgatgtggggtttgaaaaccca
atgtttgcttgtctggaaatggattatgaggaagcagacaacgatccaacaggtgaagct
gcagccaacacacagcagacattgacgttttatgaattggacttgggtttgaaccatgtt
gtcaggaaatacagtgagcccctggaagagcatggcaacttcctcataacagttcctggt
ggttctgatggccccagtggggtgctgatctgttctgaaaactatattacttacaaaaac
tttggtgaccagcctgatatcagatgcccaattcccaggagacggaatgacttggatgac
ccagagaggggtatgatctttgtctgctctgctacacataagaccaagtctatgttcttc
ttcctggcccagacggagcagggagacatcttcaaaattactctggagactgatgaagac
atggtaacagagattcgactgaagtactttgacactgttcctgttgctgctgccatgtgt
gtgctgaaaacagggtttctctttgtggcatctgaatttggaaaccattacctgtaccag
atagctcacctgggggacgatgatgaggagccagagttttcctctgccatgcctcttgag
gaaggagacacattcttttttcagcctcgacctctgaagaacctggtgttggtggacgag
ttggacagtttgtctcctattctgtgttgtcagatagcagatttggccaatgaagacaca
ccccagttgtatgtggcttgtggtcgggggcccaggtcatccctgagggttttaagacac
ggacttgaggtatctgaaatggctgtctcagagctgcctggtaaccccaatgctgtatgg
actgtgaggagacatgttgaagatgaatttgatgcctacattattgtgtccttcgtaaat
gccacgctggtgctgtctatcggagagactgtagaagaagtgactgactctggattcctg
ggtactacaccgaccttgtcctgctctcttcttggtgatgatgctttggtacaggtttat
ccagatgggatccggcacatccgagcagataagagagtaaatgaatggaagacaccaggg
aagaaaaccattgtaaaatgtgctgtgaaccaaagacaagtagtgatagcactgactgga
ggagaactggtttactttgagatggacccgtcaggacagctgaatgagtacacagagaga
aaggagatgtcggctgatgttgtttgcatgagcctggccaatgtcccccctggggaacag
cgttcccggttccttgctgttggactggtggacaacactgtcagaattatttcacttgac
ccttcagattgtttacagcccctgagtatgcaggcgctgcctgcacagcccgagtcgctg
tgcatcgtggagatgggtggcacagagaagcaggatgagctgggagagaggggctccatt
ggctttctgtacctgaacattggactgcagaacggtgtgctgctgcggaccgtcctggac
cctgtcactggcgatctctccgacaccaggaccagatacctcggctcccggcctgtcaaa
ctcttccgtgtccgaatgcaaggccaagaggcggtgctggccatgtcaagccgttcctgg
cttagttactcctatcaatcacgcttccacctgactcccttgtcttatgagacactggag
tttgcatctggttttgcttctgagcagtgccctgagggcattgtggccatctccacaaac
acactgaggattttggcactggagaagctgggagcagtcttcaaccaggttgccttcccg
ttgcagtacacaccccgaaaatttgtcattcatccagagagcaacaacctgatcatcatc
gagacagaccacaatgcttacactgaggccaccaaggcacagaggaagcagcaaatggct
gaggagatggtggaggctgcgggtgaggatgagagggagctggctgcagagatggctgca
gcctttctgaacgagaatcttcccgagtccatctttggtgctcccaaggcagggaatggt
cagtgggcctctgttatcagagtgatgaaccccatccagggaaatacattagatctggtc
cagctggagcagaatgaagctgctttcagcgtggctgtgtgccgcttctccaacactggt
gatgagtggtacgtgctggtgggagtcgccaaggacctgattctgaacccacgctcagtt
gctggggggtttgtctacacatacaagctggtgaatagtggtgagaagctggagtttctg
cacaagacccctgtggaggaggtccctgcagccattgctccattccaaggccgagtctta
attggagttggaaagctcctgcgtgtgtatgacctgggcaagaagaaactgctacggaaa
tgtgagaataagcacattgccaactacatctgtggcatccaaaccattgggcacagagtg
attgtttcagatgttcaggaaagtttcatctgggtgcgttacaaaaggaacgagaaccag
ctcattatctttgctgatgacacttacccccggtgggtcactacagcaacactcctggat
tatgacaccgtggctggagcagacaagtttggtaacatctgtgtggtgagattgcctccc
aacaccaatgatgaagtagatgaggatcccacaggcaacaaagctctctgggacaggggc
ctgctcaatggagcatcgcagaaggctgaagtgattatgaattatcacgtgggagaaacg
gtgctttccttgcagaagaccacactgattccaggaggctctgaatctcttgtttatacc
accttatcaggggggataggaatcttggtcccttttacttcccatgaggatcatgacttc
ttccagcatgtggaaatgcacttacggtctgagcaccctcctctctgtggacgagaccat
ctcagtttccgctcctactacttcccagtgaagaatgtgattgatggggacctgtgtgag
cagttcaactccatggagcctaacaaacagaagaatgtggctgaggagctggaccggacc
ccacccgaggtgtccaagaagctggaagacatccgcacgcgctacgctttctga
DBGET
integrated database retrieval system
