Taeniopygia guttata (zebra finch): 100219349 Help Entry 100219349         CDS       T01082                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism tgu  Taeniopygia guttata (zebra finch) Brite KEGG Orthology (KO) [BR:tgu00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:tgu03400]     100219349 (SPG11) DNA repair and recombination proteins [BR:tgu03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      100219349 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  100219349 NCBI-ProteinID:  XP_032606253 LinkDB All DBs Position 10:19776304..19805646 Genome browser AA seq 2369 aa AA seqDB search MAELRVLLAAGSGQAREAARARLSRARHALGTVLRGGGIRLEALGPGGPGRAGGSVLPGA WADFVWDSSEEEGLQSNKIKLLALAQSHDLFVYEFSVEDGKHNPNSLHSCEAQTLIKLLE AKSISVPSVFSVKILSFGNNKCKLLLNQFILVHLTFPGEDSPPETCGCFPLALPAGAVGR ITDSQFCRGILFLLDPAGWIYICDCSDGATLGKVGVALGAGQGQGPAPVSPLAALAVSPD LSTAVVTDTSQRAVAVQLNTYFRQFPEHLLCKRDPENLPVKPAEGLDEDDLASSEHSMEL LSLPFRTDRSWKAHLSSLWDRVRRRRPRGSPDLVTDLNLPWYQFFTHLEDHDPEVCEDPE RMVAFVPRAVTQAASPALHSQAAAPGRAGQQWAQIPVGAGQGMVKLECKLVTGAKAVFVL QAQDTGLSLALWDFESQDVTCSHFGRSGVYVECSAEVPLCLLLTERGLSLVLFGVTREEF LSRLMMFGSAGVVDSVCHLNGWERCSIPIHALEAGLENRQLDTVDLFLKSKESVFSLSAA CPGPEHPGGAASQSYLRNLEELRPALNLLCSAIQDNDLEPHSKHFSEQLLNLTLTFLTKQ LEEIFLHTEEPDEFLQKAADILTDYIIKLRKFLRKYPHPVMAPGHTGAELDEDLPEIEES KEWEKLTPEEVIAEAILSNKIPEAQIFFRRQQHPAESLQEFIQAGLSLVYACLLKGSPRE ASALLRNMGLDVKQELHKICFHTQDRHVRELLVKVLQEENYFSEEEKKMIDFVHQVESLY SESFQENEETQFLSRCSPWRREQELSGPRAVLCSQLGWGSPAVPRLTVTLSWALCWDQLL QELLLLPWRARQELKSCSPEVLWMHLTAQHDWLSICSWIEESEPSQAPCGPAAWPPLSPD IVDRSTLCSPYMRQDILNKLARKGIFVRSELEDFELLLQRLSCLGGVLQNPHPVPKYSTA SGLDFHAQFVLHCLEHSLQYLLYTYLDYYSLTPSNCPVLDNKELQEAHPWFEFLVQCRGV ASNPRDPKMIFQASLANAQMLIPSSQGGVSSILLEGRTLLALATTVYGPGGIDQVLQNED TEKPLKKVDPQLLKMALSPYPKLKAALFPSCTAHGILPPDISLYHLLQSLMPFDPRKLFG WQSTNTLAVSDAWSELPHFSSPQLVSRHAVLDSLDFLFYLLQGRPAFAFGTFLGQQLARS KAPRQLIQQAAREARVLALCSFGVPGVAAACVCFLELLGQDSLGLRVGLRAASLISSHSP SRDSLVEKLTKLADGEKAAAAALLTSLEEAFWDAIEQQGIERTSSDSRRQWSLVMQFCKL HNLELSTSFLRECAKSNEWLQFLIQTQLHGHQPAQVLPLLQEFPAVLRDHLELALGKVPG SARAGSVFQVLLRCQEQPSACCCLLAEGLRAQAPVLSVLAACCPGANLISCLCVWILTSA DDATRAEATARTRGWAEGAQWDLQDLAAIWKVFLRKQKSKTLLSGFQLFLKDSPLLHILE MYELCMNCKKYNEAKTKLDKFQESLTNAGAAGLPLPWLRTQALFLLELMLQQCRTDYELG KLLQLFAAAENPLLDGPHLKRLCALSEALRDSSISISRSILSSCSLEAFQGECSSILEQL QDRGMFSLAREVAALAELPVDSVVTHEVLRDLHHLRDTGQWHQTQTRAEFWKKCNETFSK HGIRSRAAAEFFLRQAEGTRESPGQEQRAAVVERELLLTLAGHWLAKEPGLAVQELQELE KQIWLCRVAERALPAEPAGPCPGTVALASLARRFSFAGLPALTAAGGHGLSVPARGEPQE ALGTVALGTMELGTAEQAALAALLGALLDQGSVQEAARVCRYFQLWHRDVALALRCRALA LGEAGLQPEVPALLTDQDSTAPGTSSLEDWTPLGCEDDAVVAALKALAEECVHGRGYCRQ VLCLYELSKDLGCSFAAVAAREPREVFRAILARRGPERGRRAQAFIACQGLPPAAVAPLL AQQVTQELLASAQGRGQKVWNPAVESQELLELAKLCQDHTLVGMQLLDKISSVPCGELSC ITELLILAHSCFSLTCHMEGITRVLQAARLLTEEHLAPREEYGLVVRLLTGIGRYNEMTY IFELLHQKHYFEVLMRKKLDPSGTLKAALLDYTKRCRPGDSEKHNMIALCFSMCREIGQN HEAAACTQLKLIECRPWEESLQDVPNLKKLLLKAVTLFIDAAESYSKDSCVRQALRCRRL TRLITLQLHFLGSGQSTRIINLGRQDLPGAILALPRFYQAAIVAEAYEFLPDWAEVLFQQ VITRGDFVYLEEFRQQRPLQPGLFEEVAKKVKQQPPADAALRNLKRFLTHCEDIYTYYRL AYEHKFYDVVNSLLKDPQTGCCLNDLLST NT seq 7110 nt NT seq  +upstreamnt  +downstreamnt atggcggagctgcgggtgctgctggcggccggctcagggcaggcgcgggaggcggcgcgg gcgcggctgagcagggcccggcacgccctgggcaccgtgctgcgcggcggcgggatccgc ctggaggcgctggggcccggcgggcccggccgggccgggggcagcgtcctgccgggagcc tgggccgacttcgtgtgggacagctccgaagaggagggtttgcaatccaacaagataaaa ctcctggctcttgctcaaagccatgacctgtttgtctatgaattcagtgtggaagatgga aaacacaacccgaactccctgcacagttgtgaggcacagacgctgataaagctcctggaa gctaaaagcattagtgtgccttcagttttctcagtgaagattctgtcgtttggaaacaac aagtgcaaacttctgctcaaccagtttatcctggtgcacctgacctttcctggggaggac tcacccccagagacctgtggctgcttccccctggctctgcctgcaggagctgtggggaga ataacagactcccagttctgcagggggatcctgttcctgctggaccctgctggctggatt tacatatgtgactgctctgatggtgccaccctggggaaggtcggtgtggccctgggggct gggcaggggcagggcccagcccctgtgtcccccctggctgccctggcagtgtcccctgac ctcagcacggccgtggtgacagacaccagccagcgagccgtggctgtgcagctcaacacc tacttcagacagttccctgaacatttgctctgtaagagagatcctgaaaatcttccagtg aagcctgcagaggggctggacgaggatgacctggccagttctgagcacagcatggagctg ctgtcgctgcccttccgcacagacaggtcctggaaggcacacctctcctctctgtgggac agagtgaggaggagaagaccacgaggctctccagacttggtgaccgacttgaatttgccg tggtatcagttttttacccatctggaagatcacgatcctgaagtttgtgaggatcccgag aggatggtggcctttgtcccccgggctgtcacacaggcggcttccccggcgctgcacagc caggctgcagcccctgggagagcaggacagcagtgggcacagatccccgtgggagcaggc cagggaatggtgaaactggagtgcaagctggtgaccggagccaaggccgtgtttgtgctg caggcacaggacacggggctgtctctggcgctctgggattttgagtcccaggacgtgacg tgttcccactttggcaggagcggtgtctatgtggagtgcagtgcagaggtgccactgtgt ctgctgctgacagagcgtggtctgtccctggtgctgttcggggtgactcgggaggagttc ctgagcaggctgatgatgtttggcagcgccggggtggtggattccgtgtgtcacctcaat ggctgggagaggtgctccatccccatccacgccctcgaggcaggtttggagaatcgccag ctggacacggtggacttgtttttgaaaagcaaagaaagtgttttcagtctgtctgcagcc tgccctgggcctgagcaccccgggggtgctgcctcccagtcctacctgagaaatttggag gagctcaggccagctctgaacttgctctgctcagcaatccaggacaatgatctggagcct cacagcaaacacttctctgagcagctcctgaacctcaccctgactttcctcaccaagcag ctggaggaaatctttctgcacacagaggaacctgatgagttcctgcagaaggctgcagat attttaactgattacatcattaaactgaggaaattcctgaggaaataccctcacccagtg atggccccagggcacacgggagctgagctggatgaagacctgcctgagatagaagagagc aaagagtgggaaaaactgacaccagaggaagtaattgctgaggccatcctcagcaacaaa atcccagaggcccagatcttcttccgaaggcagcagcatcctgccgagagcctgcaggag ttcatccaggcaggtctgagcctggtctacgcctgcctgctgaagggcagccccagggag gcttcagcgctgctgaggaacatgggcctggacgtgaagcaggagctgcacaagatctgc ttccacacgcaggacaggcacgtgagggagctcctggtcaaagtcttacaagaagaaaat tatttttctgaagaagagaagaaaatgattgactttgtgcatcaggttgaaagcttgtac tcagaatccttccaggaaaatgaagagactcagtttctttccaggtgcagcccctggagg agggagcaggagctctctgggccccgggcagtgctgtgctcgcagctgggctggggcagc cctgccgtgccccggctgaccgtgaccctcagctgggctctgtgctgggaccagctgctg caggagctgcttctgctgccctggagagcacgccaagaactcaagagctgcagccctgag gtgctctggatgcacctgacagcccagcatgactggctgagtatttgttcctggattgag gagtcagagcccagccaggctccgtgtggcccggctgcctggccccccctgagccctgac atcgtggacaggagcactctgtgcagcccctacatgagacaggacatcctcaacaagctg gccagaaagggaatttttgtccgttccgagctggaagattttgagctgctgctgcagagg ttgtcgtgcctggggggagtcctgcagaaccctcaccctgttccaaaatacagcactgcc agtggcctggacttccatgctcagtttgtcctgcactgcctggagcacagcctgcagtac ttgctgtacacttacctggactattacagtttaaccccttcaaactgccctgtcctggat aacaaggagctgcaggaagcacatccctggtttgagttcctggtgcagtgccggggggtt gccagcaatccccgagatcccaagatgattttccaggcgagtctggccaatgctcagatg ctgattcccagcagccaggggggtgtgagcagcatcctgctggagggcaggaccctgctg gccctggccaccacggtctatgggcctgggggcatcgaccaggtccttcagaatgaagat acagaaaaacctctaaagaaagttgatccacagctgttaaaaatggccttgagcccttac cccaagctcaaggctgctctctttccctcctgcactgctcatggaattctgcctcctgac atctctctctaccaccttctgcagtcattaatgccctttgatcccaggaaattgtttggc tggcagtcaacaaacactcttgctgtgtcagatgcctggagcgagctgccccacttctcc agcccccagctggtgagcaggcacgccgtgctggacagcttggacttcctcttctacctg ctgcagggccgccctgccttcgccttcggcaccttcctggggcagcagctggcccggagc aaagcccccaggcagctgatccagcaggcagctcgggaggcccgggtgctggctctctgc tccttcggtgtccccggggtggctgcagcctgcgtgtgcttcctggagctgctggggcag gacagcctggggctgcgcgtggggctgcgcgccgccagcctcatctccagccacagcccc tccagggactccctggttgagaagttaacaaagttggctgatggtgaaaaagcagcagca gcagcactcctgacctccttggaggaggccttctgggatgccattgagcagcaaggaata gagaggacatccagtgactccagaaggcaatggtccttggtcatgcagttctgcaaactc cataacctggagctgagcacgtccttcctgcgggaatgtgccaaatccaacgagtggctg cagttcctcatccagacccagctccacggccaccagccagcccaggtgctgcccctgctg caggagttccccgccgtgctgcgggatcacctggagctggccctggggaaggtgccgggc agtgcccgggcggggagcgtgttccaggtgctgctgcggtgccaggagcagcccagcgcc tgctgctgcctgctggccgaggggctccgtgcccaggcccccgtcctcagcgtgctggca gcctgctgccccggtgccaacctcatctcctgcctctgcgtttggatcctcacctccgcg gatgatgccaccagggctgaggccaccgcccgcacccggggctgggcagagggggcccag tgggacctgcaggaccttgctgccatctggaaagtcttcttgaggaagcagaagagtaaa acgcttctgagtggcttccagctctttttaaaggactcccctttgctgcacatcctggag atgtatgagctgtgcatgaactgtaaaaagtacaacgaagctaaaaccaaactggacaaa tttcaggaaagcctgacaaacgcgggggccgcggggctgccgctgccgtggctgcgcacg caggcgctgttcctcctggagctgatgctgcagcagtgccgcaccgactacgagctgggc aagctcctgcagctctttgctgcagcagagaacccgctgctggacggcccccacctgaag aggctctgtgccctcagcgaggccctgagggactcctccatctccatcagccgctccatc ctgagctcctgcagcctggaggcgttccagggggagtgcagctccattctggagcagctg caggacagaggaatgttcagcctggctcgggaggtggcggccctggccgagctgcccgtg gacagcgtggtcacacacgaggttctgagggatctccatcacttaagagacactggacag tggcatcaaacccagacaagagccgagttctggaagaagtgcaatgaaactttcagcaaa cacggcatccgcagccgcgccgccgccgagttcttcctgcgccaggctgagggcacgagg gagtccccggggcaggagcagagagctgccgtggtggagagggagctgctgctgaccctg gcggggcactggctggccaaggagcccgggctggccgtgcaggagctgcaggagctggag aagcagatctggctgtgccgcgtggccgagcgcgcgctgccggccgagcccgcggggccg tgccccggcaccgtggccctcgccagcctggcacggcgcttctccttcgccgggctgccg gccctgaccgcggctgggggccacgggctgagtgttccagcccgtggggagccccaggag gcgctgggcacggtggcactgggcacaatggagctgggcacagcagagcaggcggcgctg gccgcactcctgggcgccctgctggaccagggcagcgtgcaggaggccgcccgcgtgtgc cgctacttccagctgtggcacagggacgtggccctggcgctgcgctgccgagccctggcg ctgggcgaggccgggctgcagcccgaggtgccggccctgctgacggaccaggacagcaca gcccccggcacatccagcctggaggactggacccctctggggtgtgaggacgatgccgtg gtggcagcgctgaaggccctggcagaggaatgtgtccatggcaggggctactgcaggcag gtcctgtgcctctacgagctctccaaggatctgggctgctccttcgcggcggtggcggcg cgggagccgcgggaggtgttcagggccatcctggcgcggcgggggccggagcgtggccgc agggctcaggccttcatcgcctgccaggggctgcccccggctgctgtggccccgctgctg gcacagcaggtcacccaggagctgctggcatcggcccagggcagagggcagaaggtttgg aaccctgcagtggagagccaggagctcctggagcttgccaagctgtgccaggatcacacc ttggttgggatgcagttactggataaaatctcctctgtcccctgtggggagctgtcgtgc attacagagctgctgatcctggcccacagctgcttcagcctgacgtgccacatggagggg atcacacgcgtgctgcaggcggctcggctgctcaccgaggagcacctggctcccagggag gagtacgggctggtggtgcgcctgctgacgggcatcggcaggtacaacgagatgacctac atcttcgagctgctgcaccagaaacattacttcgaggtgctcatgaggaagaaactggac ccgagcgggacgctgaaggcggcgctgctggactacaccaagcgctgccggcccggcgac agcgagaagcacaacatgatcgcgctgtgcttcagcatgtgccgggagatcggccagaac cacgaggctgccgcctgcacccagctcaaactcatcgagtgccggccctgggaggaatct cttcaggatgttccaaatttaaagaagctgctgctgaaagctgtgactctcttcattgat gcagcagaaagttactccaaggactcgtgtgtgcggcaggcgctgcgctgccgccgcctg acacggctcatcacgctccagctgcacttcctgggctcggggcagagcaccaggatcatc aacctgggcaggcaggacctgccaggggccatcctggccttgcccaggttctaccaggca gccatcgtggccgaggcctacgagttcctgccggactgggctgaggttctgttccagcag gtgatcaccaggggcgacttcgtgtacctggaggagttcaggcagcagcggccgctgcag cccggcctgttcgaggaggtggccaagaaggtcaaacagcagcccccggccgacgctgcc ctgaggaacctgaagcggttcctcacccactgcgaggacatctacacctactacaggctg gcctacgagcacaagttctatgacgtggtgaactccctgctgaaggaccctcagactggc tgctgcctcaacgacctcttatccacctga

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