Taeniopygia guttata (zebra finch): 100219511
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Entry
100219511 CDS
T01082
Symbol
SYNPO
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100219511 (SYNPO)
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
100219511
NCBI-ProteinID:
XP_030139805
UniProt:
H0YRH6
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Position
13:12061047..12083084
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AA seq
1051 aa
AA seq
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MLRTRLQQFCLHPQPSCPMPGEAEQPPCVLGTAKGDTEGDRGCWQERGSREGQSCSQLWD
APASKPGEQEAQTGLLGGKPSGNCQRDLRGLNGDAPQPPLNGSSLALAEEPAAPSKCPGS
APELPPAADSPTGNPSQEWKVVKIQRVLINPDFEPRKTGLSRSASLSEKELKEAKARSQR
IAAQLTTAPGPSSKGVLLFHRRRQRVEGLTGAGHGGGLPLSPAPQPPQGTMEESQRQGMK
PEPEQPGKAGEGMLANASPCQEFPAEAQQVPLSVYLKENMASATTNGVQEQAASGMERGA
EGLGNAAAPAGPNTAALVLPRSPEEGKNVQVPGEVPGEVPSEVPSAPAGTATGMAPPAGQ
QQNGTQGRQYYEVHLTLAKPKPVKNRTARPFGTQASPASAQPAEEPPAPELPPPPTYAET
LSSPPPLTRVRSPPAYSALYPSQEQKMLPDPLLACGVSGPNPLPKTGILEESAARRASRK
SMFTFLEKPKLSPNPDLLDLVQSADSRKKQKEQGEPSAEDEPFALGAEAANFVPNSTARA
VQHLPPAEDAPAWSSCLKSPTIQPKKKPQPSHILTEARGKGAELFARRQSRMEKFIIEAP
SQPELLRSPSPTMSLPPSWKYDNNAYLSPMVSRRPSKSPCRPSKTPPASLYGNNLTENEV
SQKELEISRHQPYQLQSSLFILSPSKGPARSMPQEVPPPRPSLPDSYPYPQQASCPTSPL
PRSPVWHPPVAPSSGQPAASPFPGAAGALALPHESRASTGAPAEALPTSPCRLPPRAKVG
FQAPRPSYSTRNAGIEPQDRRSSLPASPTWTPRLARRPGSLDGWASPASVPELDEGPPRS
PPWSERSLSPLRQDAEPRASRQMQARLARNIINAARRKSSSPKAGGPESCRPFTPISAGP
PSLPQSPRLGPRAPQAASGVLGSLGSPSPTPKSPLRSPRAGSPQCCASPGMPRAAWAEGR
RLLLPSSASSCPVARLSPGPKSPLPSPVVAGRSPAKRCTSRSPTDSDVSLDSEDSGTKSP
GIHSFNLCPRGWTGSLRLKTGALPSGAPCTS
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggacaaggctccagcagttctgcctccacccccagcccagctgccccatgcct
ggcgaggctgagcagcccccctgtgtccttgggacagccaagggggacactgagggggac
aggggctgttggcaggagagggggagcagagagggccagagctgctctcagctctgggat
gctccagcctccaagccaggcgagcaggaggcacagacaggactgctgggagggaaacca
agtgggaactgccagagggacctcagggggctcaatggggatgcaccacaacccccattg
aatggcagcagcctggccttggcagaggagcctgcagccccttccaagtgccctggctct
gccccagagctgccccctgcagcagacagccccacaggcaatcccagccaggagtggaaa
gtggtgaagatccaacgggtcctcatcaaccctgactttgagccaaggaaaacaggtctc
tcccgcagcgccagcctctcggagaaggagctgaaggaggcgaaggcgcggagccagcgg
atcgcggctcagctcaccacggcgcccggccccagctccaagggcgtgctgctgttccac
cggcgccggcagcgcgtcgaggggctcacgggggccgggcatggcggggggctgcccctg
agccccgcgccccaaccccctcaaggcaccatggaggagagccagcggcagggcatgaag
ccggagcctgagcagcctggcaaggcaggagaggggatgctggcaaacgcctccccgtgc
caggagtttcctgctgaggcccagcaggtcccactcagcgtttacctgaaggagaacatg
gcatcggccaccaccaacggcgtgcaggagcaggcagccagcgggatggagagaggggcg
gaggggctcggaaatgcagcagcccctgcggggccgaacacggcggctcttgtcctgcca
cggagccccgaggaggggaagaacgtccaagtgcccggtgaggtgcccggtgaggtgccc
agcgaggtgcccagcgcaccagcggggacagccacagggatggcacccccagccgggcag
cagcagaacgggacacagggccggcagtactacgaggtccatctcaccctggccaagccc
aagcctgtgaagaaccggacagccagacccttcggcacccaggcatcccccgccagcgcc
cagccggccgaggaaccccctgcccctgagctgcccccaccaccaacctatgcagagacc
ctcagcagccccccacccctcacccgtgtccgctccccccctgcctactcggccctgtac
cccagccaggagcagaagatgctgccagatcccctcctggcctgcggggtgagcggacca
aaccccttgcccaaaacagggatcctggaggagtcggctgcccggagagccagcagaaag
tccatgttcaccttcttggagaagccgaagctgagcccaaaccccgacctgctggacctg
gttcagagtgcagacagcaggaagaagcagaaggagcagggggagcccagcgccgaggat
gagccctttgccctcggggctgaagctgcaaactttgtccccaacagcacagccagggct
gtgcagcacctcccaccggctgaggatgctccggcatggtcctcctgcctcaagtctccc
accatccagcccaagaagaagccgcagcccagtcacatcctcactgaagcgagagggaag
ggggctgagctctttgcccgccgacaatccaggatggagaagttcatcattgaggctccc
tcccagcctgagctgctgcggtccccatcacccaccatgtccctgcctccctcctggaag
tacgacaacaatgcttacctgtcacccatggtctccagacgcccctccaagagtccctgc
aggccctccaaaacccctcctgcatcgctgtacggcaacaacctcacggagaacgaggtg
tcccagaaggagctggagatctccaggcaccagccttaccagctccagtcttctctcttc
atcctgtccccatccaaggggccagcaaggtccatgccccaggaggtgcctccacccaga
ccctctcttcccgactcctacccctatccccagcaagcctcctgcccgacctctccgttg
cctcgttccccggtttggcatccccccgtggcgcccagctctggccagcccgcggccagc
ccgttccccggtgctgctggggctctggccctgcctcacgagagccgtgccagcaccgga
gccccggccgaggcgctgccaacctccccgtgccgcctgccaccccgggccaaggtgggc
ttccaggcaccccggccctcctactccaccaggaatgccggcatcgagccccaggacagg
cggtcgtccctccctgcgtctcccacctggacgccccggctggcgcggcgcccgggcagc
ctggacggctgggccagcccggcctcggtgcccgagctggacgagggaccccccaggtcc
cctccgtggagcgagaggtccctgtccccgctgcggcaggacgcggagccccgggccagc
cggcagatgcaagcgcggctggccaggaacatcatcaacgccgcccgcaggaagagctcc
tctcccaaagccggggggccggagagctgccggcccttcacccccatctctgccggcccc
cccagcctgccccagtcgccccggctggggccgagagccccccaggctgccagcggcgtg
ctggggagcctgggcagcccctcgcccacccccaaaagccccctgcgatcgccccgggca
ggcagcccccagtgctgcgcctcccccgggatgccccgagccgcctgggcagagggtcgc
cggctcctgctgccatccagcgcgtcttcctgccccgtggccaggctgtcccccggcccc
aagagccccctgccatcccccgtggtggctgggcggtctccggccaagcgttgcacctcc
cggtccccgacggactcggacgtctccctcgactccgaagactcggggaccaagagcccg
ggaatccacagcttcaacctctgtccccggggctggaccggcagcctgcggctgaagacg
ggggctctgccctcaggggctccctgcacctcctag
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