Taeniopygia guttata (zebra finch): 100219960
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Entry
100219960 CDS
T01082
Symbol
SRRM1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03013
Nucleocytoplasmic transport
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100219960 (SRRM1)
03015 mRNA surveillance pathway
100219960 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100219960 (SRRM1)
03041 Spliceosome [BR:
tgu03041
]
100219960 (SRRM1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100219960 (SRRM1)
Spliceosome [BR:
tgu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
100219960 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
BAF1_ABF1
Motif
Other DBs
NCBI-GeneID:
100219960
NCBI-ProteinID:
XP_030146121
Ensembl:
ENSTGUG00000001135
LinkDB
All DBs
Position
23:3045236..3062238
Genome browser
AA seq
897 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
TAFLELKKEEIKQRQIEQEKLASMKKQDEDKEKRDKEDKDNREKRDRSRSPRRRKSRSPS
PRRRSSPVRRERKRSHSRSPHHRTKSRSATPAPEKKEATPEPEPSVKPKETVVQEATSNS
DIPKAPKPEPPVPETKETSPERNSKKEREKEKEKTRQRSPTRSKSRSRSRSRSPSHSRPR
RRHRSRSRRRPSPRRRPSPRRRSPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSS
SRSRSPPKKPPKRPVSSPPRKTRRLSPSASPPRRRHRPSPPASPPPKPRRSPTPQQSNRA
RKSRGSVSPSRASAPKHKSTEKRESPSPAPKPRKAELSESEEDKGGKMAAADSVQQRRQY
RRQNQQSSSDSGSSSSSEEERPKRSNVKNGEVGRRHRHSHSRSPSPRKRQKDSSPRMQME
KRWQSPVMKSRRRRSPSPPPARRRRSPSPAPPPRRRRSPSPPRRRSPSPPPRRRSPSPRR
YSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPTAKRRSPS
VSSKHRKGSPPSRSNRETRSPPQNKRHSPSPRPRASHPSSSPPPPRRGASASPQRRQSPS
PSSRPIRRVSRTPEPKKTKASTPSPRRVSSSRSASGSPETAPKKHQGPASPARSRSPSAN
WSPAKKAKSPTQSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAAAAAVA
AAVAPADTTSAQGDQEAETEPKKETESEPEDNLDDLEKHLREKALRSMRKAQVSPPS
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgggttcttccgcggaaccagtgcagagcaggacaatcgcttcagcaacaag
cagaagaagctgttgaagcagttgaagtttgcagaatgcttagaaaagaaggtggacatg
agcaaagtaaatctggaagtaatcaaaccatggataacaaaacgagtaacagaaatcctt
ggatttgaagatgatgtagtaattgaatttatattcaaccagttggaagtgaagaaccca
gattccaaaatgatgcaaatcaacctgactggttttttgaatgggaaaaatgctagggag
ttcatgggagaactgtggccactgctattaagtgcacaagaaaacattgctggtattcca
actgcatttctggaactgaagaaagaagaaataaaacaacggcagatagagcaggagaaa
ctggcttccatgaagaaacaagatgaagacaaagagaagagagataaggaagacaaagac
aacagagagaaaagagacagatccaggagcccaagaagacgcaagtcccgctctccctcc
ccgcggcggcggtcgtcgcccgtgcgccgcgagcggaagcgcagccactcccgctcgccc
caccaccgcaccaagagccgcagtgccacccctgcccccgagaagaaagaggccactcct
gaaccagagccctccgtgaaaccaaaggagactgttgtgcaagaggcaacttcaaacagt
gatatcccaaaagctcctaaacctgaaccacctgtaccagagactaaggaaacttcacca
gaacgtaattcaaagaaggagagagagaaggagaaggagaagactcgtcagagatcccca
actcggtccaagtccaggtcaaggtcccgatcccgttctccatctcattctcgacccaga
aggcgccatagatcacggtcaagaaggcgacccagcccgcggcgccggccgtccccgcgc
aggaggagcccaccccggagaatgcctcccccacccaggcacaggaggagcagatcccct
gtcaggcggagaagacgctcctcagcatcgctgtccggcagcagctcctcctcgtcctcg
tcgcgctcccgctctccaccaaagaagcctcccaagagacccgtgtccagccccccccgc
aaaacgcgccggctctccccctcggccagccccccccggcgccgccaccggccctcgccc
cccgccagccccccgcccaagccccgccgctcgcccaccccccagcagtccaaccgcgcc
cgcaagagccgcggctccgtctcgcccagcagggcttcagcacccaaacataagagtact
gagaaaagagagtctccttcgccagcgcccaaacccaggaaagcagaattgtcagaatca
gaagaagacaaaggaggcaaaatggctgcagcagattctgtccaacagagacgccagtac
aggaggcaaaatcaacagtcttcatctgattctggttcttcatcttcctcagaagaggag
aggcccaagagatcgaacgtgaagaacggggaggtgggcaggcgccaccggcactcgcac
tcgcgcagcccctcgccccgcaagcgccagaaggattcctctcctcggatgcagatggaa
aagaggtggcaatcaccagtgatgaaaagcaggaggaggaggagcccctcgccacccccc
gcgcgccggcgccgctccccttccccggcaccgccgccccggcgccgccgctccccgtcc
ccgcctcgccgaaggtctccatcaccacccccgcgcagacgttctccctctccacggaga
tactcccccccgatccagaggcgatattccccatctccccctcccaagaggagaacagct
tctcctcctccccctcccaaaagaagggcctccccttccccgcagtccaagcgcagagtc
tcccactccccaccgccaaagcagaggagctcccctactgctaaacggcgctccccttcc
gtatcttccaagcacaggaaggggtctcctcccagcagatccaacagggaaacgcgttct
ccaccacaaaacaaaaggcattcaccttcaccacggcctcgagcttcccacccctcctcc
agccctccgccgccgcgccgcggagcgtcggcatcgccacagaggagacagtcaccctca
cccagcagcaggcccatcaggagggtgtccagaacgccagaacccaagaaaacaaaggct
tccacccccagcccccggcgcgtgtcctcgtcccgatctgcatcagggtcacctgagaca
gctcccaaaaaacaccaaggacctgcatctcctgcccgctctcgctctccttctgcaaac
tggtcacctgcaaaaaaggccaagagcccaactcagagcccatcacctgccaggaattcc
gatcaagaaggtggtggcaagaagaagaagaaaaagaaggataagaagcataaaaaggat
aaaaagcacaagaaacacaaaaagcataagaaggagaaggcagctgcggctgcagtagct
gctgctgtggctccagcagacaccacctcagcacagggagaccaggaagcagagacagaa
cccaaaaaggagacagaaagtgaacccgaggacaacctggatgacctcgaaaagcacctg
cgggagaaggccctgaggtccatgaggaaggcgcaggtgtcccccccctcctag
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