Taeniopygia guttata (zebra finch): 100220017
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Entry
100220017 CDS
T01082
Name
(RefSeq) serine/arginine-rich splicing factor 5 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
tgu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100220017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100220017
Spliceosome [BR:
tgu03041
]
Common components
Common spliceosomal components
SR proteins
100220017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
SET_assoc
OB_RNB
Motif
Other DBs
NCBI-GeneID:
100220017
NCBI-ProteinID:
XP_012429625
UniProt:
A0A674HDM8
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All DBs
Position
5:28868103..28883467
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AA seq
284 aa
AA seq
DB search
MACTNLKMSGCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDA
IYELNGKELCDERVTIEHARARRGRGRFSQRFSYYQSTSGSSRYGPPVRTEHRIIVENLS
SRISWQDLKDVMRKAGEVTYVDAHRNNRNEGVVEFASYSDMKSALEKLDGTELNGRRIKL
TEDHRRHRSRSRSRSYSRSRSRSRSTGSSRSDSRSRSRSRSRSRSRSRSRSRSRSRSRSR
SRSRTPKKSYSHKSHRSSLIASSPSPSSSKRKSRSRSSSAHSRS
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggcatgcaccaaccttaagatgagtggctgccgtgtctttgttggacacttgagctca
cgtgctcgtgaacgggatgtagagaagttcttcaaaggatatggtcgcattcgagaaatc
catctaaaaaatggatttgggtttgtggaatttgaagaccacagggatgctgatgatgca
atttatgaactaaatggtaaagagctgtgtgatgaaagggtcaccattgaacatgctcga
gcccgaagaggaaggggaagattctcccagcgcttcagttattatcagtctacgagtgga
tctagccggtatgggcctcctgttcgtactgaacacaggatcattgttgaaaacctttca
tcccgtatcagctggcaggacttgaaagatgtcatgagaaaggcaggggaggtcacctat
gtggatgcacacagaaacaacaggaatgaaggggttgtggagtttgcatcttacagtgac
atgaagagtgcactggaaaaactggatggcactgagctgaatggacgcagaattaaactg
actgaagaccacagaaggcatagaagcagatctcgatcaaggagttactcaagatctcgc
agccggtccaggtctacaggatcttccagatcggacagccggtcccggtccaggtcaagg
tcccggtccaggtccaggtctcgctctcgatcccgatctcgctctcgatcccgctctcgt
tctcgcagtcgtactcctaaaaagagttactcccacaaaagccaccgctccagcttgata
gcttcttccccttctccctcgtcttctaaaagaaaatctcgttctaggtcgagctctgct
catagccgtagttaa
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