Taeniopygia guttata (zebra finch): 100220228
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Entry
100220228 CDS
T01082
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X2
KO
K12878
THO complex subunit 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03013
Nucleocytoplasmic transport
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100220228 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
100220228 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100220228 (THOC1)
03041 Spliceosome [BR:
tgu03041
]
100220228 (THOC1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100220228 (THOC1)
Spliceosome [BR:
tgu03041
]
Complex C
Other components
EJC/TREX
100220228 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100220228 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
100220228
NCBI-ProteinID:
XP_002194707
Ensembl:
ENSTGUG00000010204
LinkDB
All DBs
Position
2:105364153..105384825
Genome browser
AA seq
656 aa
AA seq
DB search
MSPPLFSLPEARLRFTTSTREALINKSIKPLLNAFNQVPGSENEKKCTLDQVFRVVVEEE
IINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVAT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPPDSKPMRPVRKRPAPEDF
LGKGSNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQADPENMVEN
KYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKT
GEDDDEEDNDALLKENNESPEAQRDKAMTGEQIESFANRLGEQWKALAPYLEMKDSDIRQ
IELDSEDVRMRAKQLLVAWQDQEGPHATPENLITALTKAGLGDLAESLTNDTEGSS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctccgcttcacgacatccaccaga
gaggctctgattaacaaaagcatcaagccattgttgaatgcgtttaaccaggttcctgga
agtgaaaatgaaaagaagtgtaccttggatcaagtttttagagttgttgtagaagaagaa
ataataaacaaagctccatgtgagaatctcctggcaattatttctcttgctattaatgga
gtcacagaaggtatctgcactgcatcaactccttttgtgcttttgggggatgttctggat
tgcctccctttggatcagtgtgacaaaattttcacttttgtggagaaaaatgttgctacg
tggaaatcgaacacattttactctgcagggaaaaattacttgttgcgcatgtgcaatgat
ctcctaagaagattatctaagtcacaaaacacagttttttgtggaagaattcagctgttc
ttggctaggttatttccactttcagaaaagtcaggccttaacctacagagtcagtttaac
ttggaaaatgtcactgttttcaataccaatgaacatgagagcactctgggacagaagcac
accgaggagagggaagaaggaatggacgtggaagaaggtgaaatgggagatgatgaagca
ccaacaagttgttccattccaatagattataacctgtatagaaaattctggtcacttcaa
gattattttagaaatcctgtgcagtgctatgagaaggtatcatggaagacatttcttaag
tactcagaagaagttttggctgttttcaaaagttacaagttggatgacacccaggcttcc
cgaaaaaagctggaagaattaaaaacaggaggagaacatgtatattttgcaaagttccta
actagtgaaaagctgatggatttacagctgagtgacagtaacttccgtcgtcacatcttg
ttgcagtacctaatactatttcagtatctaaagggacaagttaaatttaaaagttcaaac
tatgttctaacagatgaacagtctctttggattgaagatactacaaaagcagtctaccag
cttctttcagaaaatcctccagatggggaaagattctcaaaaatggtagagcatatatta
aatactgaagaaaactggaactcatggaaaaatgagggctgcccaagctttgtgaaagaa
agacctcctgattctaagccaatgagacctgtgaggaagaggccagctccagaggacttc
ttaggaaaaggatcaaacaaaaaaatccttatggggaatgaggaactgacccgcctttgg
aatttatgtcctgataacatggaagcctgtaaatctgagagtagggaatacatgccaaca
ctggaggaattttttgaggaagctattgaacaagcagaccctgaaaatatggttgaaaat
aagtataaggctgtgaacaattctaactatggctggagagcgctgagacttctggcacgc
agaagtccccacttcttccagccaacaaaccaacaattcaagagtttacctgaatatcta
gaaaacatggtgatcaaattagccaaggagctgcctcctccttctgaagaaataaaaaca
ggtgaagatgacgatgaggaagataatgatgctttattaaaggaaaacaatgaaagtcca
gaggcacaacgggacaaagccatgacgggcgagcagatcgagtcctttgcaaacaggctg
ggggagcagtggaaggccttggccccctacttggagatgaaggactctgatatccggcag
atcgagctggacagcgaggacgtgaggatgagagcgaagcagctgctggtggcctggcag
gatcaggagggccctcacgccacccctgagaacctgatcacggcgctgaccaaagccggg
ctcggggacctggccgaaagcctcaccaacgacaccgaaggcagcagctaa
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