Taeniopygia guttata (zebra finch): 100220473
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Entry
100220473 CDS
T01082
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100220473 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100220473 (LIG3)
Enzymes [BR:
tgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100220473 (LIG3)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100220473 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
mRNA_cap_enzyme
DUF3802
Motif
Other DBs
NCBI-GeneID:
100220473
NCBI-ProteinID:
XP_030143652
UniProt:
H0Z3J4
LinkDB
All DBs
Position
19:5575244..5588654
Genome browser
AA seq
979 aa
AA seq
DB search
MPAGGGALSHAARALGRAAALLCPRPQLRLATAFSCSAGCWWQLLFQPAPVPSPKQRGVA
GASPLSSPLPFPLRSACAAAETMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPN
PFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKDTINKYIAEAN
SKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFSAKPKNSEDAPANPAQKPSLSAARC
DPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPGV
IKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKSLLTI
QEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALD
PNAYEAFKASRNLQDVVERVLQNQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACKSIEY
AMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQS
MILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERR
KFLHDNMVEIPNRILFSEMKHVTKAADLADMITRVIREGLEGLVLKDIKGNYEPGKRHWL
KVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCAGGHD
DATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEA
HTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEEESTAGSSG
ENDGNSRSSTPHSSIKSPPSKSPAKAQKEEDSKGIVGSPQKSEEKRGEKRKASEMEDNGK
KQPLLDIFTGVRLYLAPSVKDFDRIRRYFIAFDGDLVSEGDTASATHVLGDIAGSPGAQR
VTARWIWECIRKRRLLAPC
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgggcggcggggcgctgtcacacgccgcccgcgctctcggcagggccgcagcg
ctgctctgcccccgcccgcagctccgcttggccacagcgttctcctgctccgccgggtgc
tggtggcagctgctgttccagcctgcccctgtgccatccccgaagcagcgcggagttgcc
ggcgcgtccccgctgtcgtccccgctgccgttcccgctgcgctcggcctgcgcggccgcg
gagaccatggcagagcagcggtactgcgtggactatgccaagcgaggcaccgcgggctgc
aagaagtgcaaggagaagatcgtgaaggggatggtgcgcatcgggaagatcgttcccaat
cctttcaccgagtccggaggggacatgaaggagtggtaccatgtcaagtgcatctttgag
aagctggacaaagcccgggccactactaagaaaattgaagatatcacagatttggagggg
tgggaagagctgcaggatgaggagaaagatacaatcaacaagtacatcgcagaagccaat
tccaagactggaggtaccccaaagaaaaaggtgatagtgcaggcaaaactcactgccacg
ggacagctgaccacaaaagatccaccaaagaaattctctggattcagtgctaagccaaag
aattcagaagatgcccctgcaaaccctgcccagaagcccagcctgtctgcagccaggtgt
gatcccaagcacaaggactgcctgctgcgggaattccgcaagctctgcgccatggtggct
gaaaagccaagctacaatgtgaaaactcagatcatccaggacttcctcaggaagggatct
gcaggagatggttttcatggtgatgtatacctcaccattaagatgctgttaccaggtgtc
attaaaatagtttacaacttgaatgataagcagattgtaaagctgttcagcaggattttt
aactgcaaccaggaagaaatggtccgggacctggagcagggagatgtttctgagaccata
cggatcttcttcgagcagagcaagacctgtcccccagcagccaagagcctcctgaccatc
caggaggtcgatgagttcctcatccagctgtccaagctcaccaaggaggatgaccagcag
agtgtcctgcagcagatcagtcgcaggtgtacaggcaacgacctgaagtgcatcatcagg
ctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttggatgctctggac
cccaacgcctacgaggctttcaaggcctcgcggaacctgcaggacgtggtggagcgggtg
ctgcagaaccagcaggaggcagagaaggtgccggggctgaagaggaccctgagcgtgcag
gcctcgctcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgagtat
gccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggcgagcgcgtg
caggtgcacaagaacggggatcacttcagctacttcagcaggagcctcaagcctgtgctc
ccccacaaagtagcccattttaaggatttcatcccccaggctttccctggtgggcaaagt
atgattctggattcagaagttctcctgattgacaataaaactggcaagccacttcctttt
gggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctctttgtg
tttgactgcatctacttcaatgacatcagcctgatggacaggcccctgtgtgaacggcgc
aagttcctccacgacaacatggtggagatccccaacaggatcctgttctcagagatgaaa
catgtcacaaaagctgcagatctggcagatatgatcacccgggtcatccgggaggggctg
gaagggctggtgctgaaggatataaagggtaattacgagccagggaaacgccactggctg
aaggtgaagaaggattatctcaacgagggagcaatggctgacactgctgacctggtggtg
ctgggggctttctatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggc
tgctacgaccccaagagtgagaagtggtgcacagtgaccaagtgcgctggtggccacgat
gatgccaccctggcacgtctgcagacagagttggacatggtgaagatcagcaaggatcct
agtaaaattccaaggtggctaaaaattaacaaaatctactacccagacttcattgtccca
gatccaaagaaagcgccggtgtgggagatcacgggggccgagttctccaaggccgaggcg
cacactgcggacgggatctccatccgcttcccgcgctgcacccgcatccgcgacgacaag
gactggcagactgccaccaacctgcagcagctcaaggagctgtaccagctctccaaggag
aaggctgatttcagtgttacagctggggaggaagaggaatccacagctggcagcagtgga
gagaatgatgggaattccaggtcttccacacctcacagcagtattaagagtcccccaagc
aagtcgcctgcaaaagcccagaaggaagaagacagcaaaggaatcgttggatcccctcaa
aaatccgaggagaaacgaggggagaagagaaaagcatctgagatggaggacaacgggaag
aagcagccgctgctggacattttcacgggggtgaggctctacctggcgccctcggtgaag
gactttgaccgaatccgccgctacttcatcgccttcgacggggacctggtgtcggagggg
gacacggcctcggccacccacgtgcttggggacattgctggcagccccggggcccagcgg
gtgactgccaggtggatctgggagtgcatccgcaagcgcaggctgctggccccgtgctag
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