Taeniopygia guttata (zebra finch): 100220604
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Entry
100220604 CDS
T01082
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03020
RNA polymerase
tgu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100220604 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
100220604 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
100220604 (POLR2B)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100220604 (POLR2B)
Enzymes [BR:
tgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100220604 (POLR2B)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100220604 (POLR2B)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100220604 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
100220604
NCBI-ProteinID:
XP_002192218
Ensembl:
ENSTGUG00000002929
LinkDB
All DBs
Position
4:complement(53543324..53559989)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcaatatgatgaggacgatgatgagatcacgcccgac
ctgtggcaagaagcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagttggattcatttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagcagaagcccagcatgcctcaggagaagtggaagag
ccaccccggtatctgttgaagtttgaacaaatctatctctccaaacctacacactgggaa
agagatggagcaccctcacctatgatgccaaatgaagccagactgagaaaccttacgtat
tctgcccccttgtatgtggatataactaaaacagtcattaaagaaggggaggaccaattg
cagacccagcatcagaaaacctttataggaaaaattcctatcatgttgcgttccacgtac
tgtttgctgaatggtttaactgaccgtgatctttgtgagctgaatgagtgcccacttgat
cctggtggctacttcatcattaatggatcagaaaaggttctgatcgctcaggagaaaatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcttctcgaccaacgagtactatatgggtcagcatgctg
gccagaggtggacagggtgcaaagaagagtgccatcgggcagcgcattgtagcaactctg
ccgtatatcaaacaagaggtgcccatcatcattgtcttccgtgcactcggctttgtgtct
gacagggacattttagagcacatcatatatgattttgaagacccagaaatgatggaaatg
gtcaaaccatctctggatgaagcatttgtcattcaagagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcactaaagaaaagagaatcaagtatgccaaa
gaagtcttacagaaagaaatgcttccacatgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagactgttgctggcagcactgggaagaaga
gagctggatgacagagatcattatggcaacaaaagactggatcttgctgggccactcttg
gctttcctgttcagaggaatgttcaagaatttgctgaaggaagtgagaatatatgcacaa
aagttcattgacagagggaaagatttcaacttggagttggcaattaaaacaagaattatt
tcagatggtttgaaatattcattggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccgcctgacttttgcatccacgctttcc
cacctgagacgcctgaattctcccattgggagagatggaaaactggccaagccccggcag
ctgcacaacaccctgtggggaatggtttgccctgctgagacccctgagggtcatgcagta
ggacttgtgaagaatttagccctgatggcttacatttctgtggggtctcagccatcccca
attctggaattcttggaagaatggagtatggaaaacctagaagaaatatctccagcagca
atagctgatgctaccaagatatttgttaatggctgctgggtaggaatacacaaagatcca
gagcagctgatgaataccctaaggaagcttcgtcgtcagatggacatcattgtgtcagag
gtctcgatgatcagagatattcgtgagcgagaaatccgcatctacactgatgcaggcaga
atttgccggccccttttaattgtggagaaacagaagttgctgctgaagaaaaggcacatt
gaccaactgaaggaacgagagtataacaattacagttggcaggatctcgtggccagtggt
gtagtagagtacattgacaccctggaagaagagactgtgatgctggcaatgactccagat
gacttgcaagagaaaggtgtagcatattgttcaacatacacacactgtgagattcaccca
tccatgatcctgggagtgtgtgcatctattatccctttccctgatcacaaccagtctccc
aggaacacgtaccagtctgctatgggtaaacaggctatgggagtgtacatcaccaacttc
cacgtccgtatggatacgctggcacatgtgctgtattatccccagaagcccctggtaacg
acacgctctatggagtacttgaggttcagagagttgccagcaggtatcaactcgattgta
gccattgcatcatacacaggctataaccaggaagactctgtcattatgaaccgttctgct
gttgacagaggctttttcaggtctgtgttctatcgctcatacaaagagcaggagtctaag
aaagggtacgaccaagaggaagtttttgaaaagcctacacgtgaaacttgccaaggtatg
agacacgcaatctatgacaaactcgatgatgatggtttgatagcccctggggtacgtgtg
tctggggatgatgtcatcattggcaaaacagtcacactgccagaaaatgaagatgagctg
gaaagcaccaacagacgcttcaccaagagagactgcagcacctttctgcggaccagtgag
actgggattgtggatcaggtcatggtaaccctgaaccaggaagggtacaaattctgcaag
attagggtacgttctgtaagaattccacaaattggagataaattcgctagcagacatggt
cagaaaggaacctgtgggatccagtacaggcaagaggatatgcccttcacgtgtgaaggc
atcacacctgatatcattatcaacccccatgccatcccttcccgtatgaccattggtcac
ttgattgagtgtcttcagggcaaggtgtctgcaaacaaaggagaaattggtgatgctaca
ccttttaatgatgctgtcaacgtgcaaaagatttccaaccttttatcagattatggctat
catctaagaggaaatgaggtcctctacaatggcttcactggtcgaaaaatcacatcccag
atcttcattggccctacctattaccagcgcttgaagcacatggtggatgacaaaatccat
tctcgtgcacgagggccaatccagatccttaacagacagcccatggaaggcagatctcgt
gatggtggccttcgctttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaagattgtttgaagcttcagacccataccaggtccatgtgtgcaac
ctctgtggaatcatggcaattgcaaacacgaggactcacacctacgaatgccgtggatgc
cgtaataaaactcagatatcgttggttcgaatgccctacgcctgcaaactcctcttccag
gaactgatgtctatgagtattgcacctcggatgatgagtgtttag
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integrated database retrieval system
