Taeniopygia guttata (zebra finch): 100220611
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Entry
100220611 CDS
T01082
Symbol
NPHP3
Name
(RefSeq) nephrocystin-3 isoform X1
KO
K19360
nephrocystin-3
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tgu03037
]
100220611 (NPHP3)
Cilium and associated proteins [BR:
tgu03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
100220611 (NPHP3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3_hel
NPHP3
TPR_10
TPR_1
TPR_7
TPR_8
TPR_2
TPR_MalT
TPR_16
TPR_17
TPR_19
NPHP3_N
TPR_11
NACHT
AAA_16
AAA_22
KAP_NTPase
DUF2225
14-3-3
AAA_19
AAA_14
T2SSE
Viral_helicase1
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
100220611
NCBI-ProteinID:
XP_030120946
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Position
2:complement(43417255..43447117)
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AA seq
1317 aa
AA seq
DB search
MGTASSLVSPAGAVGEVIEDTYGGGGGEACEIPVEVKPKARLLRGSLRRVGGSRPGGLIG
ASFKSTASVQELECVAEYERLRKEYEIFRVSKNNEVASMVKKEAKLDRENKRLRAELQAL
QKTYQKILREKESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKENEIQDLLRAKREL
EAKLQRLQAQGIQVFDPEESDSDDNCTDVTATGAQSEYWNGGVLGSEPSMGSMMQLQQSF
RGPEFAHSSIDVEGPFANINRDDWDAAVASLLQVTPLFSHSLWSNTVRCYIISTDETQPE
VSIFIRNYSPKLQRVCETMGYFFQVVNFSTENERPLQDVRKWEIEKSSLVILLLHLTLPS
CLLEDCEEAFLRNPEEKPRLIYHRREDGKVSSVSVQQLIEQISCMNKAKMIDHVGGMEEG
AYEIYNCVEKIIKQDILGCEMTDLEGKDLGNKEDSTAPEEEVFGDVLWDAHDEQEQMEAF
QQASNSTCELGFEKYFERLNDLVAAPAPIPPLLVSGGPGSGKSLLLSKWIQLQQKHSPNT
LILYHFVGRPMSTSSESALIIKRLTLKLMQHSWLVSPLTFDPAKLLEEFPRWLEKLSARH
QGSIIIIIDSIDQIQQAEKHMKWLIDPLPVNVRVIVSVNVETCPQAWRLWPTLHLDPLNS
KDVKSLISAECNSANVKLTKEQEKKLERHCRSATTCNALYVTLLGKTIACVGNTGNIDEI
LQQCCQCQDTVSLYRLVLRSIQESLQSDKEKDLLREILCVIGVSHNGVSESELMELYPEL
TSAVLASLLHSLHKMCLLTYGCGLLKFQHLQAWEMVKLEYMEAGENVISAYRQRLVEYFT
MQLSQDRVTWRSADELPWLFQQQGDKQKLHKCLLNLFVSQNLYKRGHFAELLSYWQLVGK
DKSSMAAEYFDSLKEYEKCSEGEESMICLADLYETLGRFLKDLGLLSQAVAPLQRSLEIR
ETALDPDHPRVAQSLHQLAGVYVQWKKFGNAEQLYKQALEISENAYGAEHPRVARELDAL
ATLYQKQNKYEQAEQLRKKSFKIRQKAARQKGSLCGFALLRQRALQLEELTLGKDTSDNA
RTLNELGVLYYLQNNLETAELFLKRSLEMRVRVLGSDHPDCAQSLNNLAALYNEKKHYDK
AEELYEKALDIRRRALAPDHPSLAYTVKHLAVLYKKMGKLDKAVPLYELAVEIRQKSFGP
KHPSVATALVNLAVLYCQMKKQIEALPLYERALKIYEDSFGQMHPRVGETLKNLAVLSYE
RGDFEKAAELYKRAMEIKEAETLLIGGKATSRHSSSGDTFSLKSALSPNALLEHGQR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggcgtcgtccctggtgagcccggcgggcgcggtgggcgaggtgatcgaggac
acgtacggcggcggcggcggcgaggcctgcgagatcccggtggaggtgaagcccaaggcg
cggctgctgcgcgggtccctgcgccgcgtcggcggctcccggcccggcggcctcatcggc
gccagcttcaagtcgacggcctcggtgcaggagctggagtgcgtggccgagtacgagcgc
ctgaggaaggagtacgagatcttccgcgtcagcaagaacaacgaggtggcctccatggtg
aagaaggaggccaagctggacagggagaacaagcggctgcgcgccgagctgcaggcactt
cagaaaacataccagaaaatacttagagagaaagaaagtgcattagaagctaaataccaa
gccatggaaagagctgctacttttgaacatgatcgagacaaggtcaaaaggcaattcaag
atttttagagaaactaaggaaaatgagattcaggacttactgagggccaaacgagagcta
gaagcaaaactccagagactgcaggcccaggggatccaagtgtttgatcctgaagagtct
gattctgacgataattgtacagatgttacagctacaggggcacaatctgaatactggaat
ggaggagtgttgggaagtgagccatccatgggtagtatgatgcaacttcagcagtctttc
agagggcctgaatttgctcatagttccatagatgtcgagggaccatttgcaaatataaat
agagatgattgggatgctgctgttgccagcttattgcaggttactcctctgttttcccac
tctctgtggagtaacacagtaagatgttacattatcagtactgatgagactcagccagaa
gtgtccatcttcattagaaactactccccaaaacttcagagagtctgtgaaacaatgggg
tacttctttcaagttgttaatttttcaacagagaatgaaaggcctcttcaggatgtaaga
aaatgggaaattgaaaaaagttctttagtcattttgctcctgcatttaactttgccaagt
tgtttgttggaggactgtgaagaagccttcttgagaaatccagaagaaaagccccggtta
atttaccacagaagggaggatggcaaagtcagttcagtctcagtgcagcagttaattgag
caaatttcttgcatgaacaaagcaaagatgattgaccatgttggaggtatggaggaagga
gcatatgaaatctataattgtgtggaaaaaataattaaacaggatatattggggtgtgaa
atgacagacctagaaggcaaggatttgggaaataaggaagactccactgctcctgaagaa
gaagtttttggtgatgtattgtgggatgcacacgatgaacaagaacagatggaagctttt
cagcaggcctctaattcaacatgtgagctgggatttgagaaatattttgaacgtctgaat
gacctagtagcagcaccagcaccaattccaccactgcttgtatcaggaggaccaggctct
gggaaatctctccttctgtcaaaatggattcaattacagcagaagcattcaccaaacact
ctcattctttaccactttgttggaaggcccatgtctaccagttcagaatctgcattgata
attaagcgccttactctgaagcttatgcaacactcttggttagtatcacctctgactttc
gatccagctaaacttctggaagagtttccccgttggctggaaaaactttctgcacgccat
caaggcagcattattataattattgactctattgaccaaatacagcaagctgaaaagcat
atgaagtggttgatagatccactgccagtgaacgtgagagtgattgtatcagtgaatgta
gaaacctgtccgcaggcgtggaggttatggcccactcttcatcttgatccactgaattcc
aaagatgttaaatctctcattagtgcagaatgtaactctgcaaatgttaaattgactaaa
gaacaggagaagaagcttgagagacattgtcgttctgccacgacttgcaatgctttgtat
gtcactctcttgggcaaaaccattgcttgtgttggaaatacaggaaatattgatgagatt
cttcagcagtgttgccagtgtcaagacacggtgtcactgtacaggcttgttctgagatca
attcaggaatcattgcagagtgataaagagaaagatcttttgagagagatactgtgtgtc
attggtgtcagccacaatggggtgagtgaatcagagctgatggagctttatcctgagctg
acttctgcagtgctggcctcactccttcatagcctgcacaaaatgtgtctgctgacatat
ggctgtggtttgctgaagttccagcacctccaggcatgggagatggtaaaactagagtat
atggaagcaggtgaaaatgttatttctgcctatagacaaagactagtggaatatttcacc
atgcagttaagtcaagaccgagtgacttggagaagtgcagatgaacttccctggctcttc
caacagcagggagataagcaaaagctacacaagtgtcttttgaatctctttgtgtcccaa
aacctttacaaaaggggacattttgcagaattgctgagttactggcagctggttgggaaa
gataagagctctatggcagctgagtatttcgactctctgaaagaatatgaaaaatgcagt
gagggagaggaaagtatgatctgcctggctgatctttatgagaccctgggacggtttctt
aaggacctaggtcttctcagtcaggctgtagctcctctgcagcgctctctggagattcga
gagaccgcgctggatccagaccaccccagggtggcacagtcactccaccagctggcagga
gtgtatgttcagtggaagaagtttggaaatgctgaacagctgtataaacaggcattggaa
atctctgaaaacgcctacggagctgaacaccctcgggtggcccgtgaacttgatgcactt
gcaaccttgtaccaaaagcagaacaaatatgaacaagctgagcaactgaggaaaaagtcc
ttcaaaatacgccaaaaagcagcaaggcagaaaggcagtctgtgtggctttgctctcctg
cgtcaaagagccctgcaactggaagagctcacattaggcaaggatacatcagataatgct
cgaaccctgaatgagcttggagttctctactacctgcagaataatcttgagacagcagaa
cttttcctgaagcgctccttggaaatgcgggtgcgagtcctgggatccgaccacccagac
tgcgcgcagtccctgaacaacctggcagccctgtacaatgagaagaagcactatgacaag
gctgaggagctctatgagaaagctttggacatcaggaggagagccttagctccagatcat
ccctccttggcttacactgtgaaacacctagcagtgctgtacaaaaagatgggaaaactt
gacaaggctgttcctctatatgagctagcagttgaaattcgacagaagtcatttggccca
aaacacccaagtgtagcaactgctctggtaaacctggctgtcctttactgtcagatgaaa
aaacagattgaagctttgcctctctatgaacgtgcactaaagatttatgaagacagcttt
ggtcaaatgcatcctcgtgtaggggaaacactgaaaaatttggctgtgctaagctatgaa
aggggagactttgagaaggcagctgaactttacaagagagctatggaaataaaagaagca
gagactttgttgataggtggaaaagcaacttcccgacactcatcaagtggagacacgttc
agcttaaaaagtgcattatccccaaatgctttgctggaacatggacaaaggtga
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integrated database retrieval system
