Taeniopygia guttata (zebra finch): 100220791
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Entry
100220791 CDS
T01082
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03015
mRNA surveillance pathway
tgu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100220791 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100220791 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100220791 (CPSF6)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100220791 (CPSF6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100220791
NCBI-ProteinID:
XP_030115361
Ensembl:
ENSTGUG00000006884
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Position
1A:33509749..33541622
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AA seq
583 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYVRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggcgaggagttcaaccag
gaggctgaatatggtgggcatgatcagattgatttatatgatgatgtaatttctccatct
gcaaataatggagatgctccagaggatcgcgattacatggattctcttccaccatctgtt
ggggatgatgtaggtaaaggagctgcaccaaatgttgtctatacgtatactggaaagaga
attgccttgtacattggaaatctcacttggtggacaacagatgaagacttaactgaagca
gttcattcactgggggtaaatgacattttggagataaaattttttgaaaatcgtgctaat
ggccagtctaaagggtttgcccttgtgggtgtgggatcggaagcatcctccaaaaagctg
atggatttgttgcctaaaagagaattgcatgggcagaatcctgttgtaactccgtgtaat
aaacagtttctgagtcagtttgaaatgcagtcaaggaaaaccacacagtctggccagatg
tctggggaaggtaaagctggtcccccaggaggaagctcacgagcagcatttccacctagt
aatagaggtcggggccgttttccaggtgccattccaggtggagatagattccctggaccg
gcagggccaggagggccaccaccgcctttcccagctggacaaactcccccacgtcctccc
ttaggtcctcctggcccaccaggcccaccaggccctccacctcctggtcaggtcctccca
cctccattagctggacctcctaatcgtggtgatcgtccaccaccaccagttctgtttcca
ggacagccttttggtcagcctccacttgggccacttcctccaggccctccaccaccagtt
ccaggctatgggccaccaccaggtccaccaccacctcagcagggtccacctccacctccg
ggtccatttccccctcgtccacctggtcctcttgggccacccctgactcttgctcctcct
ccacatctccctgggccaccgccaggtgctccaccaccggcaccacatgtgaatccagct
ttcttccccccacctgccaatagtggcatacccacttcagacagccgtgggccacctccg
acagatccatatgtccgacctccaccatatgacagaggtgactatgggccacctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcgaggacacctcta
agtgaagcagaatttgaagaaatcatgaatagaaatagggcaatctcaagcagtgccatt
tcaagagctgtatcagatgccagtgctggggactatggaagtgctatagagaccttggta
actgcaatttccttaatcaaacagtccaaagtatctgcagatgatcgctgcaaagtactt
attagttctcttcaggactgccttcatggaattgagtccaagtcttatggttctggatcc
agaagacgtgagcgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgc
cacaaatcgcgtagtagagatcgtcacgatgactattaccgggaaagaagccgtgagaga
gagagacatcgcgatcgtgacagagatcgtgacagagaacgagacagagagagagaatat
cgtcaccgttaa
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