Taeniopygia guttata (zebra finch): 100220820
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Entry
100220820 CDS
T01082
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu02010
ABC transporters
tgu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100220820 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100220820 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tgu02000
]
100220820 (ABCA1)
Transporters [BR:
tgu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100220820 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
100220820
NCBI-ProteinID:
XP_002190956
Ensembl:
ENSTGUG00000000310
UniProt:
H0YPZ0
LinkDB
All DBs
Position
Z:4173933..4265102
Genome browser
AA seq
2261 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTFQLLVEIAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRYPTPGESPGIVGNFNASIVSRLFSDARRLLLYSQQDT
SIEDIQKVLGMLRKLGNSSGLDLKLRDFLVDNETFSDFLHHNVSMPSSAVEELLDAGVNL
QQVIVSGYRMRLRDLCNGSTSSEFLMIQNRMAAMDSEPFICTLSKEKLHATEQALRANLD
PLKPLQRQLSFNSSLWDLSETVETLRESFGKLVKELLSMKSWSDMRQEVMFLTNVNASNS
STQIYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEDDLINFYDNSTTPYCN
ELMKNLESSPLSRIIWRALKPLLIGKILFTPDTPAVRKVMSEVNRTFQELGVFRDLGGMW
EEISPKIWTFMESSQEMDLIRTLLKGKAFWDLHLPASNWTVEDVARFLSNSPEDFETENG
SVYTWVDAFNETDRAIQTISRFMECVNLDKLEPVPTEVRLINKSLELLDERRFWAGIVFT
GMVPDSTDLPQHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFVYLQDV
VEQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFMRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLNNGILWLSWFISSLVPLLMSAGLLVLILKMGNLLPYSDPSVVF
IFLSIFGVVTIIQCFLISTVFSRANLAAACGGIVYFTLYLPYVLCVAWQDHISFSLKIFA
SLLSPVAFGFGCEYFALFEEQGVGVQWDNFFESPLEEDGFSITTSAVMMMFDTFLYGVMT
WYIESVFPGQYGIPRPWYFPFTKSYWFGEESQDRQQLHLDQKGSSEVCKEEEPVHLSLGV
SIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAFI
LGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMATDV
GLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLS
SCRNSSSTVSYLKKDDSVSQSSSDAGLGSDHESDTLTIDVSAISNLITKHVSEARLVEDI
GHELTYVLPYKAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADDSGVDAE
TSDGTLPARRNRRVFGDRQSCLRPFTEDDAFDPNDSDIDPESRETDLLSGVDGKGSYQMK
GWKLTQQQFMALLWKRMLIAKRSRKGFFAQIVLPAVFVCIALMFSLIVPPFGKYPSLELQ
PWMYDEQYTFISNDAPEDAGTHKLLDALLDKPGLGTRCMQGHSIPDTPCTVGQKEWTTAS
VPESVLDIFLKGNWSMQNPSPSCQCSSEKIKKMLPVCPPGAGGLPPPQREQDTADILQNL
TGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGASSSLVLPPSHEVTDAIKQVKK
ILELAQGSSGDRFLNSLSSFMKGLDTKNNVKVWFNNKGWHAIASFLNVINNAILRANLQQ
GENPSAYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVRPVVYWLANFVWDMCNYIVPATLVVIIFICFQQKSYVSSSNLPVLAL
LLFLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTDNQLKDIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIKPRPVYAKLPPVNDEDEDVTRERQRIISGGGQSDILEIKELTKI
YRMKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTDVTGGEAFLKGNSILSN
IQEVHQNMGYCPQFDAVNELMTGREHLEFFALLRGVPEKEVCKVGEWAIRKLGLVKYGEK
YAGNYSGGNRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGANPDLKPVEEFFG
HAFPGSVLKEKHRNMLQYQLPSSPSSLAKIFSILSQNKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHTKDLSLHKNQTVVDIAILNSFLQDEKVKESCV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggctttctggacgcagctgggattgctgctatggaagaactttacctacagaagaaga
cagactttccagctgctggtcgaaattgcctggcctctgtttatcttcttcatcctgatc
tctgtaagactttcatatccgccctatgagcagcatgaatgtcactttccaaataaagct
atgccttcagcaggaaccttgccatggatacaggggatcatctgcaatgccaacaaccca
tgtttccgctatccaactcctggggaatcccctggtattgttggaaacttcaatgcctcc
attgtttcccgcctgttctcagatgccaggaggttactgctgtacagccaacaggacacg
agtatagaggatatccagaaggtcctgggaatgctacgcaagctgggaaattcttctggc
ttagacttgaaacttcgggatttcctggttgacaatgagacattctctgacttcctccat
cataatgtgtccatgccatcatctgccgtagaggagctactggatgcaggggtcaacctc
cagcaggtcattgtgtctggttatcgaatgcgactgcgagatctctgcaatggctcaacg
tcatctgaatttctaatgatccaaaatcgcatggcagccatggactctgaacccttcatt
tgcaccttgtcaaaggaaaaactccatgcaactgagcaagccttacgtgctaacctggat
cctttgaagcctcttcagagacaactttctttcaattcctccttgtgggatctgtcagaa
actgtggaaactttgagagagagctttgggaagcttgttaaagagctgctgagcatgaag
agctggagtgacatgaggcaagaggtgatgttcctgaccaatgtgaatgcctcaaactcc
tctacacagatctatcaggctgtgtcacgcatcgtgtgtggccatcctgaaggtggaggg
ctcaaaattaaatccctcaactggtatgaggataacaattacaaagcactgtttggaggc
aacagcactgaagatgatttgattaacttctatgataactccacaacaccctactgcaat
gagctaatgaagaacctggaatccagcccgctttccaggattatctggagggctctgaaa
cccttgctgattgggaagatcttgttcactccagatacgccagctgtaaggaaggtcatg
tctgaggtgaacaggacattccaggagctgggtgtgtttcgtgacctcgggggaatgtgg
gaggagataagcccaaagatttggacatttatggaaagtagtcaggaaatggatctcatt
cggacgttgctgaaaggcaaagccttctgggacctgcacttgccagcttccaactggaca
gtggaggatgttgcccgtttcctgtcaaacagtccagaggactttgagacagaaaatggc
tctgtgtacacctgggtggatgccttcaatgagacagaccgggctatccagaccatctcc
cgcttcatggagtgtgtcaacctggacaaactggagcctgtgcccacagaagtccggctc
attaacaaatccttggaacttctggatgaaaggaggttctgggctggcatagtcttcact
ggaatggttcctgacagcacagaccttcctcagcatgtgaaatacaagatacgcatggac
attgataatgtggaaaggaccaacaagatcaaggatgggtactgggatcctggtccccgt
gctgacccctttgaggacatgcgctatgtctggggaggctttgtctacctgcaggatgtg
gtagaacaggccatcatcagggttcagacaggcacggagaagaagacaggagtttatgtg
cagcagatgccctacccgtgttatgtggatgacatatttatgcgtgtcatgagccgctcc
atgcctctcttcatgacactagcttggatctactcagtggctgtgataattaagggcatt
gtgtatgagaaggaagcccggctgaaagaaacaatgaggattatgggacttaacaatggc
atcctgtggttaagctggttcattagcagccttgtccctctcctgatgagtgcaggactg
ctggtgctgatcctgaagatggggaatctgctgccttacagtgatcctagtgtggtattc
attttcctctcgatcttcggtgttgtgaccatcatccagtgcttcctcatcagcactgtc
ttctccagggccaacctggcagctgcctgtgggggcattgtctacttcacgctctacctg
ccttatgtgctgtgtgttgcctggcaggaccacatcagcttctcactcaagatttttgca
agcctgctgtctccagtagcctttggttttggttgtgagtactttgccctgtttgaggag
cagggagttggtgttcagtgggacaacttctttgagagcccattggaagaagatggcttt
agcatcaccacatcagccgtcatgatgatgttcgataccttcctgtatggagtcatgacc
tggtacattgaatctgtcttcccaggccagtatgggattcccagaccctggtactttcct
ttcacaaagtcatactggtttggggaggaatcacaggacaggcagcagctccatcttgac
cagaaggggtcttcagaagtctgcaaggaagaagagccggtgcatctgagtcttggtgtt
tccatccagaacctggtcaaggtttaccgtgatggcaagaaagttgctgtagatggtctc
acacttaacttctatgaaggacaaatcacctcctttctgggacataacggagcagggaaa
accactaccatgtccattttgactggcttgttccctccaacttcgggtacagccttcatc
ctgggcaaagatatccgctctgagcttagcaccatcaggcagaacctgggtgtatgtcca
caacacaatgtgctgtttgacttgctgactgtggaggagcacatctggttctatgctcgg
ctcaaagggctgccagaaaagaaggtgaaagaggagatggagcagatggcaacagatgtt
ggtttgcctcacaaactgaaagctaggacaagcaagctctctggtggcatgcagaggaag
ctctctgttgccttagcttttgtcggtggctccaaggttgtcattctggatgagcctaca
gctggggtggatccttattctcgcagaggaatatgggaactgcttctgaagtatcggcaa
ggtcgcaccatcattctctccacacaccacatggatgaggcagacattctgggggaccgg
attgccatcatttctcatggcaagctctgctgtgttggctcttctctcttcctgaagaac
cagctgggaactggctattatttgaccctggtcaaaaaggatgtagattcttctctgagc
tcctgccgaaacagcagcagcacagtttcctatctgaaaaaggatgacagtgtctcccag
agcagctctgatgctggccttggcagtgaccatgaaagtgacacattgacaatagatgtg
tctgcaatttcaaatctcattacaaaacatgtttctgaggcaagactggtagaggacata
ggtcatgaattaacctatgtcttgccatacaaagctgctaaagagggagcttttgtggag
ctgttccatgaaatcgatgaccgtctttctgatcttggcatttccagctatggcatctcg
gaaaccaccctggaggagatcttcctgaaagtggctgatgatagcggtgtggatgctgaa
acctcagatggtacattgccagccagaaggaacagacgtgtgtttggagacagacagagc
tgccttcgtccgtttacagaagatgatgcatttgatcctaatgactcagacatagatcca
gaatccagagagacagaccttctcagtggtgtggatgggaaaggctcctaccaaatgaag
ggctggaagctcacccagcagcagttcatggctttgttgtggaagaggatgctcattgcc
aagagaagccggaagggtttttttgcccagattgtgctgccagctgtctttgtgtgtatt
gctctcatgttcagcctgattgttcctccttttgggaagtatcccagcctggaattgcaa
ccctggatgtatgatgagcagtacacttttattagcaatgatgctccagaagatgcaggc
actcacaagcttttggatgcccttcttgataagccggggcttgggacacgctgtatgcag
ggacattccatcccggacactccttgcactgtggggcaaaaggaatggaccactgcttca
gtcccagagtcagtgctggacatcttcctgaaaggcaactggagcatgcagaatccttcc
ccatcttgccagtgtagcagtgagaagatcaagaagatgctgcctgtatgcccccctggt
gcaggcggcctgccacccccacagcgtgagcaagacacagctgacatcctccagaatctg
acaggccgcaatatatcagactacctggtgaagacctatgcacagatcattgggaaaagc
ttaaagaataaaatctgggtgaatgagttcaggtatggtggattttccctgggagccagc
agttctcttgtgcttcctccaagtcatgaagtcactgatgccattaaacaggtgaagaaa
attttggagctggcacaggggagttctggggatcgatttctcaacagtttatcaagtttc
atgaaaggcctggatacaaagaacaatgtgaaggtgtggtttaacaacaagggctggcat
gccattgcatccttcctgaatgtgatcaacaatgccatccttcgggccaacctccagcag
ggtgaaaatcccagtgcttatgggatcactgccttcaaccacccgctgaacctcaccaag
cagcagctctctgaagtagctctgatgaccacctctgtggatgtccttgtgtccatctgt
gtgatctttgccatgtcctttgttcctgccagctttgtggttttccttattcaggaacgt
gtcagcaaggctaaacatttgcagttcatcagtggtgtgaggcctgtggtctactggctg
gccaactttgtgtgggatatgtgcaactacattgttccagccacactagttgtcatcatc
ttcatctgcttccaacagaagtcctatgtatcctcctccaacttgcctgtgctggctctc
cttctgtttctctatgggtggtccatcacccctctcatgtatccagcttcctttgtgttc
aaaatccccagcacggcctacgttgtgctgaccagtgtgaatctcttcattggcatcaat
gggagcgtggccacctttgtcctggagctcttcactgacaatcaactgaaggacatcaat
gacatcctgaagtctgtcttcctcatcttcccccacttctgcctgggccggggactcatt
gacatggtgaaaaaccaggctatggctgatgctctggagagatttggagagaatcgtttt
gtgtcccctctgtcatgggacctggtgggaaggaacctctttgccatggcagtagaaggt
gtggtgttttttctcatcacagtgctcatccagtacaggttcttcatcaaacccaggcct
gtctatgccaagctgcctcctgtgaatgatgaagacgaggatgtaaccagagagaggcag
aggataattagcggaggaggacagagtgacattttggaaatcaaggagctaaccaagatt
tacagaatgaagagaaagccagcagttgacaggatctgtgttggaatcccccctggggag
tgttttggactcctgggagtaaatggtgctggcaagtcatctacttttaagatgctaact
ggtgatacagatgtgacgggaggagaagctttcctcaaaggaaacagtatcttgtccaac
atccaagaagtccatcagaacatgggctactgcccacagttcgatgctgtaaatgaactg
atgacagggcgagagcacttggagttctttgcactcctgagaggtgttccagagaaagaa
gtctgcaaggttggtgagtgggcaattcggaaactaggccttgtgaaatacggagaaaaa
tacgctgggaattacagtggagggaacagacgcaagctttccacggccattgctctcatt
ggagggccacctgtggtgttcctggatgagccaacaacagggatggatcccaaagcacgt
cgcttcttgtggaattgtgctctgagtattatcaaggaggggagatcagtggtgcttaca
tctcacagcatggaagaatgtgaagccctgtgcactcgaatggcaataatggtcaatggg
agattcaggtgtctgggcagtgtccagcacctaaaaaacaggtttggagatggttacacc
atagtggtgagaattgcaggggcaaacccagacttaaagcctgttgaggagttctttggg
catgccttccctggaagtgtcctaaaggaaaaacatcggaatatgctgcagtaccagctt
ccctcttcaccatcctccctggccaaaatattcagtattctctcccagaacaagaagaga
ctccacatagaagactactctgtttctcagaccacacttgaccaagtttttgtaaatttt
gctaaggaccaaagtgatgacgaccatactaaggacctgtcattgcacaaaaaccagact
gtggtggacattgcaatccttaactccttcctgcaagatgagaaggtaaaagaaagttgc
gtgtga
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integrated database retrieval system
