Taeniopygia guttata (zebra finch): 100221250
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Entry
100221250 CDS
T01082
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100221250 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100221250 (EDC4)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100221250 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
100221250 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
100221250
NCBI-ProteinID:
XP_030137997
Ensembl:
ENSTGUG00000005312
LinkDB
All DBs
Position
11:complement(14076367..14109587)
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEVVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAATNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKDKIQEEILVNIRRPDNTPLNTFRRIIWCPFI
PDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMTILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLLAE
EENDSLSVEGAQGSGAVESAADVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPAHGSH
EEFAFPDHMADLNTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSASVTDTSLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPAGLPGEVLEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKAKKDDGDINQSPRSSNNQVTAEFQDEVMCMLRSQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHMERVIDSQQEQEQRRLDRVLMEGQQRNGQL
QEHLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTIATKLTAVEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKAREQEVREPLLNQLRQLISTFQSTTEQLASTIAASVHTE
VQHQLHVIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQAEPHN
PLSKAARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggccgggaggttcagtgaatgagaaccagagaccatcgaattcatataac
ggggacctgaacgggctgctggtgcctgatccccttgggagcggagatggacctgctttg
gccaagccagtgcatcgcagcatctctctaggagccctgcaggagaagcaagtcatctgc
ctttctggggatgacagctccacatgcttagtgatatcagcaaaagacgtggaggtagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaaatactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagctgccaccaatggctctgccatggtgcgggtg
ttgagtgtcagcactgctgagcggaccttgctgaagggattcacaggaggcgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
tttgtctggcgcctggccatggataaagataaaatccaagaggagatcttggttaacatc
aggcgacctgacaatacccccctgaacaccttccggagaatcatctggtgccccttcatc
cccgacgacaacgaggagagcggcgaggagggaagtcagaccttggcgttgttgcatgag
gacagggcagaggtgtgggatttggacatcatccgaaccaacaacagctcctggccagtg
gaagtgcctgatatcaaagaaggtttcattgtggtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggacaggatgagccaagatgtcttcatgagtggaaa
ccccatgatggtagacctctttcctgcctgctcttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggttcctcatcacaggagctgatcagaacagagagctgaag
atgtggtgcacggtgtcttggacctgtttgcagacggttcgcttttctcctgacatcttc
agctccatgactattcttcccagcctgaaagtctgcttggacctctccgctgaatatctg
atactgagtgatgtgcaaagaaaagtcttgtatgtgatggagttgatgcagaaccaagag
gagggcaaggcttacttcagctccatctcagagttcctccttacccatccagtgctgagc
tttggcatccaggccgtgagccgctgccggctaaggcacaccgaggtgctcctggcagaa
gaggaaaatgacagcttgagtgtagaaggtgctcagggctccggggctgttgaatcagca
gcagatgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatc
aggttccaacctcttcatagccctgacacaagtgcttccatgcctgcccatgggtctcat
gaagaatttgcttttccagaccacatggctgatctgaacacggaagggctgggatctgaa
aaggagtctgtgcacggctcccagccagacctgcggcggatcgctgatctgcccgtgcca
gcagacttcctttctctctccagtgatgccaaacccaagctgatgactccagatgcattc
atgacaccaagtacttctcttcaacagatcgctgtctctccgggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcgcttctgtcacagatacctctctgcccagagct
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacgctgagcagc
agcagcagcagtctccagaccagtcctaggagtcactctgttcttatcccaggcctccct
gacaagctaacaccaaaggcacctgttccagtcgcaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgtgagcgctct
ccagatgtcatttcctctgcttccactgccatgtcccaggatatcccagagattgcttcc
gagaccctgcagcgcagctttgcggcggctccggccgggctcccgggggaggtgctggag
cccgggcaccacgcagacagtatggcctcagctgcctctgccctgcacctgctgtctccc
aggaaccgccacaactccgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatcgttactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccatggccagcggctcctgacataacccgggaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcttaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagaacaaagtgac
catgatgatgaagttgcaagcttggcttctacgtcaggtggatttggtgccaaagcatct
gcgcagaggctgcctgtgaaggactggaaggtcaaggcatccccccgggcttccccaaag
ctgaagcgcaaggccaagaaggatgacggggatataaaccagtcaccaagatcatctaac
aaccaggtgacagcagagttccaggatgaggtgatgtgcatgctgaggagccaacagcgg
gagctctctgagctgcggcagaaccagatggagctgctgcagagactcacggatcacctc
gatgccatccagagctccctcatgggccacatggagagggtgatcgactcccagcaggag
caggagcagagaagactggaccgggtgctgatggaagggcagcagcgcaatgggcagctc
caggagcacctgtcccagcagctctcccagtccctgtccacagctgtgtgcaaccgtctg
gagaggaccattcgggaggagatgaagaagacagtgccccagtgcatttccaagagcatg
gaccctaccgtcagccagctcagtaatactattgctaccaagctcactgctgttgagggg
acactgaaagagaatattaccaagctggtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacactctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacttgaagaacaag
aaggcacgagagcaggaggtgcgggagccgctgctgaaccagctgcggcagctcatcagc
accttccagagcaccacagagcagctggcgtccaccatcgcggccagcgtccacaccgag
gtgcagcaccagctgcacgtcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaagtgagcctggctatgaaggagcagcaggcagccgtcacc
tcgagcatcgtccaggcgatgcgctcggcagccgggacgcccatcccctctactcacatg
gatttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggttctgtatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccgctgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcactcgtacagaactgaagctgaactac
ttggaggatgcagtgatgcaccttgaccaaagcgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcaaaagctcttccagttcctgcaggcggaaccccacaac
cctctgagcaaggctgcgcgtcgcctcatgatcatgctccagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
