Taeniopygia guttata (zebra finch): 100221752
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Entry
100221752 CDS
T01082
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03030
DNA replication
tgu03410
Base excision repair
tgu03420
Nucleotide excision repair
tgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100221752 (RFC1)
03410 Base excision repair
100221752 (RFC1)
03420 Nucleotide excision repair
100221752 (RFC1)
03430 Mismatch repair
100221752 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tgu03032
]
100221752 (RFC1)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100221752 (RFC1)
DNA replication proteins [BR:
tgu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100221752 (RFC1)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100221752 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
RNA_helicase
BRCT_2
AAA_30
AAA_5
RuvB_N
AAA_33
AAA_17
AAA_16
AAA_18
AAA_7
nSTAND3
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
100221752
NCBI-ProteinID:
XP_030126805
Ensembl:
ENSTGUG00000008901
LinkDB
All DBs
Position
4:complement(22512070..22545954)
Genome browser
AA seq
1183 aa
AA seq
DB search
MAPAPGTPRPPLSPARRGRDGSAARRAAGVGAKAGAWSRERPARHGDRAAAAMDIRKFFV
VVPPGKQQECETVKKSEKIKNGEGPSSGRKREKEAKVNNSPSEDDSKQKRTKKKRRIIYD
SDSEEEVQSVKKSKKPPEKKAATSKPGKILKQDPVAYISDTDEDDDFANKRITLKPKENG
TSAIGCPGTNTGKKEEVKPQAKSKPLSPVKQTPTSALDFFGTRSVQRSEKKLVASKRKEP
SQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKARKSTEGEQT
VLSINSSPNTTAGYKQSERVKAADSAGAAKNYSAKPQTKSEQLKDSCLSPQSSDGKQEEI
AEKERGAQNSLSRGKAASGKEEKTTPKERVSPKKTESISPEDSEKKRNNYQAYRSFLNRE
GPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLV
MGRDCGQSKCEKASTLGTKIIDEDGLFDLIRTMPGKKSKYELAAEAEAKKVESKPKKTPQ
KAEAGKRNFSPYKREANNKKCKSTPEKGETISSVKKETTAVRKLTDFRRQTVEEKEAPKP
KGNLVSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTLEDGQA
KPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKNSLKEVV
AESLNNTSIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKVPIICM
CNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDI
RQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAARMSLIDKS
DLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDRQIRSKQNW
NLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCK
RTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDSYCLMKEDVENIMEISTWGGKPSPF
SKLDPKVKAAFTRAYNKEAHLTPYSLSAVKASKRQLGSAATLDLSEDLTVEEIQSDEDEQ
DTVESDAMIKQRKVKSSKLPKREKNEETTKKEGKRKEKTRHLE
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggccccggccccgggcacgccccggccgcccctcagccccgcccggcgcggccgtgac
ggcagcgcggcgcgccgtgcggcgggagttggcgcgaaggcgggagcatggagccgggag
cgtcccgctaggcacggggaccgcgctgccgccgccatggatatccggaaattctttgtt
gttgtacctcctggaaagcaacaggaatgtgagactgtgaagaagagtgaaaaaattaaa
aatggtgaaggaccctcaagtgggaggaaaagggaaaaggaagctaaggtgaataattca
cccagtgaagatgattccaaacagaagcggacaaaaaagaagagacgaataatctacgat
tcagattcagaagaggaggtgcagtcagtgaaaaaatccaagaagccacctgagaaaaaa
gcagctacttcaaaacctggtaaaattctaaagcaggatcctgttgcttatatttcagac
acagatgaagatgatgattttgccaataaaagaattaccctgaaaccgaaggagaatggg
acgtcagcaattggttgtccaggaacaaatactgggaaaaaagaggaggtaaaaccacaa
gctaaaagcaagcccctctctccagtgaaacaaactcccacctctgcacttgatttcttt
gggacgaggagtgtccaacgctcagaaaagaagctggtagcaagtaaaaggaaagagcct
tcacagagcagagacagcacactagatgatgaggccattgctaggcaactgcagcttgaa
gaagattcagagctggagagacagctacatgaagatgaagaatttgctagaactctggct
atgttggatgaaacaccacagaagaaaaaggctcggaagagcaccgaaggagagcaaaca
gtactgagcatcaacagcagccctaatacaacagcagggtataagcagtcagaaagagta
aaagcagcagactcagctggtgcagccaagaattactctgcgaagccacaaactaaatct
gaacaattgaaagattcttgtttatccccacaatcatctgatggtaaacaagaagagatt
gctgaaaaggaaagaggtgctcaaaattcactatcaagaggaaaagcagcttctgggaaa
gaagagaagacaacaccaaaggagagagtttctcccaagaagactgagtctataagccct
gaggactctgaaaagaagaggaacaattaccaagcttaccgaagcttccttaatcgtgag
ggtcctaaagcactgggctccaaagagatacctcagggagctgagaactgcttggaaggc
ctgacatttgtaattacgggtgttctggagtgcattgagagagatgaggccaagtctctg
attgaacgttacgggggaaaagtaactggcaatgtcagcaagaagacaaattacctggtg
atggggcgggactgcggccagtccaagtgtgagaaggcatcaactttaggtacaaaaatt
attgatgaggatggtctattcgatcttattcgaaccatgccaggcaaaaagtcaaaatat
gagctggcagctgaagcagaggcaaagaaagtggagtcaaaacccaaaaagacaccacag
aaagctgaagctgggaaaaggaattttagcccctacaaaagggaagctaataataaaaaa
tgcaaatctactcctgaaaaaggagaaaccatcagttctgtaaagaaagaaaccactgct
gttcgaaaacttacggactttaggcgtcagactgtagaggagaaagaagccccaaaacct
aaggggaacttggtttctgaggttaatgaagatggcacagagagattgctatgggtagat
aaatacaagcctgtatctcttaaggcaattattggacagcagggtgagcaaagctgtgcc
aataaactgctccgatggctcagaaactggcacaagaacaccttggaagatggacaagca
aaacccagtaaaactggaagcaaagatgatgggacaggctttaaagcagcattactttct
ggtccacctggagttggtaaaactactacagcggctttggtttgtaaggaactgggttac
agctacgtggagctgaatgccagcgacactcgcagcaagaacagcctaaaggaagtagtt
gctgagtcacttaacaacaccagcatcaaagacttctattctggtgcatcttcatcagtt
agcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaagacaga
ggagggattcaggagttgattggcttgatccgacacacaaaggtccccatcatttgtatg
tgcaacgatcgcaaccaccctaaaatgcgctccttggtccactactgtttggatcttcgt
tttcagagacctcgtctagaacagatcaaaggtgccatgatgtctattgcatttaaagaa
ggtttaaaaattcccccacctgctatgcaagagataatcctggcagcaaatcaggacatc
agacaggttttacataatcttaatatgtggtgtgcaaaagacaaatcactgacttatgat
gaggctaaaacagatgccagcagagccaaaaaggacataaaactgggccctttcgatgta
gtccggaaggtttttgctactggagaggaggctgcccgtatgtctcttatagacaaatca
gatcttttcttccatgattattcattagcacctctctttgtccaagagaactatgtgcat
gtgaaaccagctgctgctggaggtaatttaaaaaagcacttggtactcttgagtagagca
gctgatagtatatgtgatggtgatatagtggacagacagattcgtagcaagcagaactgg
aatctgcttccaacacaggctatttatgcaagtgttctcccaggggagctgatgaggggt
tacatgtcccagtttcctgtctttcccagctggttggggaaattttcatccacaggcaaa
cacgatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagacatgcaag
aggacagtaaatatggaatatttgtcgtatttgcgggatgcacttgtccagcccttgaaa
gactttggagcagatggtgtacaacaagctataacatttatggactcttactgcttgatg
aaagaagatgtcgaaaatatcatggaaataagcacgtggggaggcaaacccagtcctttt
tcaaagctggatcccaaggtcaaagcagcttttacacgtgcctacaacaaagaggcacat
ctgactccatattcacttagtgctgtcaaggcctctaaaaggcagttgggatctgcagca
accttagatctgagtgaagacttgactgtggaagagatccaatctgatgaggatgagcag
gacactgttgagagtgatgcaatgattaagcaaagaaaggtgaagtcttccaagctgcca
aaaagagagaaaaatgaagaaacaacaaaaaaagaagggaaaagaaaagagaaaacaaga
catttagagtaa
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integrated database retrieval system
