Taeniopygia guttata (zebra finch): 100221910
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Entry
100221910 CDS
T01082
Symbol
RAD50
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03440
Homologous recombination
tgu03450
Non-homologous end-joining
tgu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100221910 (RAD50)
03450 Non-homologous end-joining
100221910 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100221910 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tgu03032
]
100221910 (RAD50)
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100221910 (RAD50)
DNA replication proteins [BR:
tgu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100221910 (RAD50)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100221910 (RAD50)
BRCA1-C complex
100221910 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
100221910 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
DUF2703
AAA_29
AAA_13
Motif
Other DBs
NCBI-GeneID:
100221910
NCBI-ProteinID:
XP_032606694
Ensembl:
ENSTGUG00000001377
UniProt:
A0A674HVD5
LinkDB
All DBs
Position
13:2542606..2560967
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVRAQIRLQFRDVNGEVMAVQRSMLCTQKGKTPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VISIENQLEPLKSSLAVVEQNLTKVMRLDNEVKALESRKRQMEKDNQDLQQKMEEVFQGT
DEQLRDRYQNHQKIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHIVTRDSLIQSLAAQLELDGFEQAPFTERHIASFRRLVKDRQDRDTEAANRMMREFAQ
KETMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQAELKNVKCELQQLEGFSDRISELDEE
IGKMEHELEKAERNSNVETLEQEVQTLQNEKINLDKALRRLDQEMEQLNLHTTTITQMEM
LKKDKAEKEDQIRKVKSRHSEELTSLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKR
LASVEYDKTYASNELKXKEAQLSSHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRRTVAELQDKEIPDLRSKIQNANRDLTGLKGEIEEQESLLQTALS
EEEGAKARLQDITLMERYQTDIRDVERKIAQQEAKLLGVNLSRTVHQVSKEKQDKKHLWD
TVTSKIELNQKLKQDQQSQIQQLRSAVNDLKAEKLQIVSSMQRRRQLEEQTVELTTEVQA
LCREIKEAEEQVLPLDAKLDKLQQEKEELVNKRTASNKETQDKMNSINEKVKDIYKYVKE
IENYIQQGKEDYKKQKESELDEVNSRLAACEKQKEKINKEMEMTRQDIDTQKIRERWLED
NLTLRKRNEELKEVEDNIKQLMKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDADESVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCINCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIRKNIDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagtttcggggtagaagataaa
gacaaacaaattatcactttctttaatccattaactattttggtgggaccaaatggtgcg
ggaaaaacgactatcattgaatgtcttaaatatatatccactggtgattttcctcctggc
accaaaggaaagacatttgttcatgatccaaaggttgccaatgaaaccgacgttagagct
cagattcggttgcagttccgtgatgtcaatggcgaggtcatggctgtgcagcgctccatg
ctttgtacccagaaaggcaagactccagaatttaaaacactggaatctgtcattactaga
acaaagcatggcgagaaggtcagcctgagttccaagtgtgctgaaatagatcgggagatg
atcagcgcccttggtgtttccaaagctgtgcttaacaatgtcattttctgtcaccaagaa
gaatccaactggccattaagtgaagggaaggctctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcacttgaagctctgcgtcaggtacgactgaaacaaagc
ttgaaagtgaaagagtgtcagacagaactgaaatatctgaaacagaataaagagaaagca
caggaaatccaggatcatctcagcaacagagaagctcaacttgctgcttctaaggagaat
gtaatatcaattgagaaccagcttgaacctctaaagagctctctggcagtagttgaacag
aatctcacaaaagtaatgaggttggacaatgaagtgaaggccctcgagagcagaaaacgg
cagatggaaaaagataatcaagatttgcagcagaagatggaagaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagaaaatagtgaaggagaaggaaaag
agattgttggactgtaagcgtgatttagatagagccactaaagagtgccagagatttaac
agtgagaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caggagcacattgtgaccagggattccttaattcagtctctggcagcacagctggaatta
gatgggtttgagcaagcacctttcactgaaaggcacattgccagtttccgcaggctggtg
aaggacaggcaggacagagatacagaagctgcaaatcgtatgatgagagaatttgcacag
aaagaaacaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacattcaaaataagaaacaagcagagctgaagaatgtc
aaatgtgaattgcagcagttggaggggttttcagacaggattagtgagttggatgaggag
attggcaagatggaacatgaactggagaaggctgagaggaacagcaatgtagaaacactg
gaacaggaggtacagactctgcaaaatgagaaaataaacctggacaaagctctcaggagg
ttggatcaagagatggagcagttgaatctacacaccacaacaattacccaaatggagatg
ctgaagaaagacaaagcagagaaagaagatcagataagaaaagtcaagtcaagacattct
gaggaactaacatcactgctgggatactttcccaataaaaaacaacttgaagactggctt
catggtaaaaataaaaagattaatcagacaagggatactcttgcaaatctgaacaagcga
ttggcatcagtagaatatgataaaacttatgccagtaatgagctaaaanaaaaagaagcc
cagttgtccagtcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gacctgaacaaacttcaagatgaaattgaaaaaagttccaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacaactgacagaggagaaccagtcttgt
tgtccagtttgccaaagagtttttcagacagaggctgaactgcaggatgtcatcagtgat
ctgcagtctaaactgcggcttgccccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccactgcggcgaactgtagct
gaactccaagataaggaaattccagacctgaggagcaagatccagaatgcaaacagagat
ttaacaggcctgaagggtgagatagaagaacaggaatcactcctccagacagctttgtct
gaggaagaaggtgccaaagcccgtttacaggatataactctgatggaaaggtatcagact
gatatcagggatgttgaacggaaaattgctcagcaggaggctaagctgctaggagtcaat
ttaagtagaactgtgcatcaagtaagcaaagaaaaacaagacaaaaaacacttgtgggat
acagttactagtaaaattgagttaaatcaaaaactcaagcaggaccagcaaagccagatt
cagcagctgaggagtgcagttaatgacctcaaggcagagaagctgcagattgtcagcagc
atgcagcggcggcggcagctggaggagcagactgtggagctaaccactgaggttcaggcc
ttgtgcagagagatcaaggaagcagaagagcaggtacttcctttggatgcaaagttagac
aaattgcagcaggagaaggaagaactagtgaataaaaggactgcaagtaataaagaaaca
caagacaagatgaatagcataaatgagaaagttaaggatatatacaagtacgtgaaagaa
attgaaaactatattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcgtttggctgcctgtgagaaacagaaggaaaagataaataaagag
atggaaatgacccgacaagatattgacactcaaaagatacgggaaaggtggctggaggat
aatctcactttgaggaagcggaatgaagagctaaaagaagttgaagacaatataaaacaa
cttatgaaggagatgggagaaatgaaagtcccccagatgaaaaatgagcagaaacatttg
gaggagaaaatagaatctctgaaaaggaaccatcatgttgctcttggccgccagcgtggg
tttgaggaggagattgttcgcttcagaaaggagctcagagagccacagttcaaagatgca
gaagaaaaatacagagacatgatgatagtcatgagaacaacagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaaaatg
gaagaaattaacaaaataattcgtgacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgcagatgagagtgtctcagccactgacaaaagaaga
aattacaattacagggtagtaatggtgaagggagatacagcactggatatgcgaggaaga
tgcagtgctgggcaaaaggtgcttgcttctctcatcattcgccttgctctagcagaaaca
ttctgtatcaactgtggcattctggccctggatgagcctacaaccaaccttgaccgagaa
aacatcgagtccctggcacatgctctggtagagataataaagagccgcttacaccaacgc
aactttcagctgctggtgattactcatgatgaagattttgttgaacttctgggccgttct
gagtatgtggaaacattctacaggataaggaagaacatcgaccagtgctctgagatcatg
aaatgcagtgtcagttccctaggctcctatgttcattag
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integrated database retrieval system
