Taeniopygia guttata (zebra finch): 100222554
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Entry
100222554 CDS
T01082
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tgu03036
]
100222554 (HFM1)
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100222554 (HFM1)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
100222554 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100222554
NCBI-ProteinID:
XP_030135014
LinkDB
All DBs
Position
8:complement(16124730..16159255)
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AA seq
1452 aa
AA seq
DB search
MFNTADMVFSLDNLFYEKPDMRQRCLENEDHKTWFIAPAPAIAEIPAAEELQRELEKNSA
NTPMVFVGGRKQEKFIQQCKSNTEKVEDKPSAPVHFGIGPEKEVLQLNVGERDKISVQRE
NLKVVSSFLSFDENKRVVDFSQQLQNKAFSENSDDESVHSTLRKSLFKKSGNVHKNTEFK
ADSVDVKEIGTYLNTSENMKDVTKEGFLRNHHHAPITRDSDLTLHRVNNEESLSENRIKI
QTFSNASEILDMTGTTGRKLEILRAVTEIPTQFRSIFKEFPYFNYAQSKALDDLLYTDRN
FVICAPTGSGKTVMFELAITRLLMEAPLPWLNIKVVYMAPIKALCSQRFDDWKEKFGPIG
LTCKELTGDTLMDDLFEIHHADIIITTPEKWDSMTRRWRDNSIVQLVRLFLIDEVHVIKD
ESRGATLEVVVSRMKTIQSSLWRLLEKHDTVPPLRFVAVSATIPNTQDIAEWLSDTKMPA
VCLKIDEDQRPVKLRKIVLGFPCSDNQTEFKFDLTLNYKIATVIQTYSEQKPALVFCATR
KGVQQAASVLAKDAKFLLSIEQKQRLQGFANSLKDSKLRDLLTYGVAYHHAGMEISDRKI
IEGAFTAGDLPVLFTTSTLAMGVNLPAHLVIIKSTMHYVGGVFQEYSETDILQMIGRAGR
PQFDTTATAVIMTRCSTRARYIQMLNGADIIESSLHRHLVEHLNAEIVLHTVTDVSVALE
WIRSTFLYIRALKNPTHYGFSSGLDKVGIEAKLQELCLKNLNDLSSFDLIRMDEANNFKP
TDTGRLMAWYYIAFNTVKQFFTIKGTETLNELITMISSCTEFVDVKLRTNEKKILNTLNK
DKDKITIRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFTLTQDTGRIFRNGLRVTRWLSD
FLSSSKNNFSALLNSLILAKCFRCRLWENSLHVSKQLEKIGVSLSNAMVNAGLTSFKKIE
DINARELELILNRHPPFGNQIKESVLHLPKYELEIEQLPKYSDTSAEILVTVKLTNYEQL
QTKRTAPDFHYVSLVIGDADNQVIFNQKIMDSVLLKTGNWMKKIEVKRALKSEDISINLI
SSDYVGLDIQRAYTAFYLAPKPEGRKVVTNQKLKAESTLDTCYGSPQSLPTAKVDTGGRS
KQEIAYKKYGNRECNHRCKNKDVCGHDCCKTGVPPKSQMNGDTNFSLYLADLRSRNSVSS
IPPVKRLKMQMLSQAENVDLKQFVFTPKSLLPALPRSSNKLSSSSPSVDQADNINTLEVA
QQQLQSWNCGKNKSRYGFSDALNVDFELRNDIWDDIDDDKLVFASNFVNKELEHGNTCLQ
SADECQPLCQYTTSKGTNNISKVSCTVQDETNSQNSDVSVVNSTSKVNFSVQNRNLTLFS
FHEKTHSSPSQEQKNVQSSSIPEIISDSSKSTRKEDFFIFTKEQEKEVDPRFLLDDEAND
VRPFLGIFDGIL
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacactgcagacatggtcttttcactggataatttattttatgaaaaaccagat
atgagacaaaggtgtctggaaaatgaagatcataagacttggtttattgcacctgctcca
gctattgctgaaattccagctgctgaggaattacagagggaactggaaaaaaactcagcc
aacactcccatggtttttgtaggagggagaaagcaggagaagtttatacaacaatgtaag
agtaacacagagaaagtagaagataaaccatcagcacctgttcattttggtataggccct
gaaaaagaagttctacaattaaatgtaggagaaagagataaaattagtgttcagcgtgaa
aatctgaaagtggtttcatcttttctttcctttgatgaaaataaaagagtagtagatttt
tctcagcaactgcaaaataaagcattcagtgaaaacagtgatgatgagagtgtccattca
acattaagaaaaagcttatttaaaaagtctggcaatgtgcataaaaatacagaatttaaa
gctgattctgttgatgtgaaagaaattggtacttacttaaatacaagtgaaaacatgaaa
gacgtgacaaaagaaggttttttgagaaatcaccatcatgctccaataactagagactca
gatttaactttgcatagggtaaataatgaagagagtctgtctgaaaatcgaattaaaatt
caaacattttctaatgcttcagagattttggatatgacaggaactacaggaagaaaattg
gaaattttgagggctgttacagaaataccaacccaatttagaagtatttttaaggagttc
ccatattttaactatgcacagtcaaaagctttggatgatcttttatatacagataggaac
tttgtgatttgtgctccaactggctctggaaagactgtaatgttcgaactagctattacc
agattactaatggaagctccactgccttggttaaatattaaagttgtttacatggctcca
ataaaagctctatgtagtcagcgttttgatgactggaaagaaaaatttggacctatagga
ctcacctgcaaggagttgacaggagatacactgatggatgatttatttgaaatacatcat
gctgacattattatcactacacctgaaaagtgggatagcatgactagaaggtggagagac
aactctatagtccagcttgtgcgactgtttctcatcgatgaagtacacgttataaaggat
gaaagccgtggtgcaaccttggaagttgtagtcagtcggatgaaaactattcagtcttct
ctttggcgtctcttagagaagcatgacactgttcctcccttgagatttgtagctgtttct
gcaacaatcccaaatactcaagatattgcagaatggctttcggatactaagatgcctgct
gtatgcctgaaaatagatgaggatcaacgaccagtgaagctacgcaaaattgtgcttggt
tttccttgcagtgacaatcagacagaattcaaatttgacttaactcttaactacaagata
gctaccgttatacaaacatactcagagcaaaaaccagcacttgtgttttgtgccacaaga
aaaggagtacagcaggctgcttctgttcttgcaaaagatgctaaatttctactgagtata
gaacagaaacaaagattacaggggtttgcaaattcattgaaagactccaaactgagagac
cttttgacatatggtgtggcttatcatcatgcgggtatggagatatcggacagaaaaata
attgaaggcgcttttactgcaggagacttgccagtactttttactactagcaccttagct
atgggagtcaacctgcccgcacacctggtgattataaaatccacaatgcattatgttgga
ggagtgtttcaagagtacagtgaaactgatattctgcaaatgattgggagagctggaagg
cctcagtttgacactaccgctacagcagtcattatgactcgttgcagtaccagggcgaga
tatatacagatgttaaatggtgctgatataatagagagcagcttgcacaggcaccttgtt
gaacacttaaatgctgaaatagtgctgcatactgtcacggatgtcagtgtagctttggaa
tggatacgatcaacatttttgtacattagagccttaaaaaatccaactcattatggtttt
tcatctggattagataaagttggaattgaagcaaaattacaagaactgtgtctgaagaac
ttaaatgatttatcatcttttgatttgatcaggatggatgaagcaaataatttcaaacca
acagacactggaagattaatggcgtggtattacattgcattcaatacagtgaagcaattt
ttcacaattaagggaactgagacactaaatgaattgattacaatgatctccagctgcaca
gaatttgtggatgtgaagttaagaacgaatgaaaagaaaatattaaacactttgaataaa
gacaaagacaaaataactatcaggtttccaatggaggggaagataaaaacaagagaaatg
aaagtaaactgtctcattcaggctcagctgggatgtattcctattcaagacttcactctg
acacaagatactggcagaatatttagaaatggcttgagagttactagatggctctctgac
tttctgtcatcatctaagaacaacttctctgctttattaaactccttgattttagcaaag
tgtttcaggtgtagactctgggaaaattcacttcatgtgtctaaacaattggaaaaaatt
ggtgtatcattgtcaaatgctatggtaaatgctgggctgacatcatttaaaaaaattgaa
gacataaatgcaagggagcttgaattgatcttaaacagacatcctccttttggaaaccag
ataaaggagtctgttttgcatcttccaaaatatgaacttgaaattgaacagcttcccaag
tacagtgacacatcggctgaaatcttagtaactgtcaaattaacaaactatgagcagctc
cagacaaagagaacagcgccagactttcactatgtttcgttggtcataggagatgctgac
aaccaagtcatttttaatcagaaaattatggattctgtgctcctgaaaactggaaattgg
atgaagaaaattgaagttaaaagagctcttaaatcagaagatatcagtataaatttaatt
agttctgattatgttggccttgatatacagcgagcatatacagccttctacttagcacca
aaaccagagggacgtaaggtggttacaaatcaaaaattgaaagctgaatctacacttgat
acatgttatggctcaccccaaagcttgccaacagcaaaagtagatacaggaggcagatct
aaacaggagattgcttacaagaaatatggaaacagagaatgcaaccaccgctgtaaaaat
aaagatgtgtgtgggcatgattgctgtaaaactggagtacctccaaagtcacagatgaat
ggagacacaaatttttctttgtacctagctgatttaaggagcaggaactcagtttcatct
atacccccagtaaaacgtctaaagatgcagatgttaagtcaagctgaaaatgtggatctc
aaacaatttgtatttacacctaagtctttattgccagccttgccaaggtctagcaataaa
ctgtcatcttcatcaccttcagtggatcaggcagataatattaatactttggaagtagct
cagcaacaactgcaatcctggaattgtggaaagaataaaagcagatacggcttttcagat
gctttgaatgtggactttgaactgagaaatgacatttgggatgatattgatgatgataaa
ttggtatttgccagtaattttgtcaataaagaattagaacatggaaatacctgccttcaa
agtgcagatgaatgtcaacccctctgccagtatacaacaagcaaaggcacaaataacatt
tcaaaagtttcatgcacagtacaagatgagaccaatagtcagaactcagatgtttctgtg
gtcaacagcacatcaaaagtgaatttctctgtacagaatagaaatttaactttgttcagt
tttcatgaaaaaacacattcaagtccttctcaagagcaaaaaaatgtacagagttcttcc
atcccagaaataatctcagactcttctaaatccactaggaaagaagatttttttattttc
acaaaagaacaggaaaaagaagtagatcctagatttcttcttgatgatgaagccaatgat
gtcaggccctttcttggaatatttgatggtattttgtaa
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