Taeniopygia guttata (zebra finch): 100222775
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Entry
100222775 CDS
T01082
Symbol
LIMCH1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tgu04990
]
100222775 (LIMCH1)
Domain-containing proteins not elsewhere classified [BR:
tgu04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
100222775 (LIMCH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
100222775
NCBI-ProteinID:
XP_030126843
LinkDB
All DBs
Position
4:23275599..23447213
Genome browser
AA seq
1771 aa
AA seq
DB search
MASPGLELGEVQPPAEPPQPELAFTEAQKWIEQVTGRSFGEKDFRSGLENGILLCELLNA
IKPGLVKKINRLPTPIAGLDNIILFLRGCKELGLKESQLFDPGDLQDTSNRVTIKNIDYS
RKLKNVLVTIYWLGKAANSCTSYSGSTLNLKEFEGFLAQMRKETEDIESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSQQTPSPDVVLRGSSDGRGSDSETDLPHR
KMPDVKKDDMLARRTSHGEPKSAVPFNQYLPNKSNQTCYVPAPLRKKKAEREEYRKSWST
ATSPLGDRPFSKPHPETIEEELNETSRLCEKEKVGSMSPEASSLKNQLGVNQSEENSIDQ
SPSCSAKETSVPKGKDVEERRKLRRLEQAGIKVMSAAQRYGSKKPVCEDNGSTPNIILRK
DNPFMTHYQGKDSGSEDEAASRVPDLEKDDFATRRARMNQPKHIVPFNSFLVGPYTSKEE
GKLEDVKKPVQMEKKEHARRRRVHMTSVRQAVTSKEDPLLQNEKTKSEEEQQVKELDNER
DDLAKRKSQSILPQLQEDVFFVNASITKADLETWKRLKLSVEPSEEDFRFSSNTLPPTDT
TVKAVAHDDFAVRKTRANRKAGSPKQKFVHFGPVTEIDQQKWDKLVIGRASSKSGTEEES
KKCSVESLSGVESSPSTTVASLGFAEASSEVSEPENKSSSEGGIKSDTDDSCRRIPSPVP
ASDVISEEQTPWSLSKQQESTKEECDRNLPDIERDDMLVRRMGIFPRRTTSSIPINCPPL
SVAPYLLQQQQEEAVAREKDLKTLQEGESTVTQEESQEQLEIPQLQSDGTENKMKFPDPQ
RDDMLARRTGAFLKQPGPSVKQFLPMPFSKQQNKQGTATELEKKTTRPEKCPQVYTNSSG
KPSIEPPQEQQQGHEDSLPPTGQDEITNTARTAQVAEDDNNEVHIGQTSKLQEVAEENKM
GTLSSKDEHLQTFGPRTAVSDDAESMSMFDMRCEEEAVAQPHSKARHEKLQNIHNQLKED
ETRWQDDLARWKSRRRSASQDLIKKEAERKKMERLLAGDGTNERRKSIKTYREIVEEKER
RERELHEAYKNAKTQEEAESILQQYTERFTISEAVLERLQMPKILERSHSVEPNSPLKDP
NPLRYLRQQSLPAPKFTATIEATIVPTTELEPSSSTGRTSPSKSVSKAVPMLTPKPYSQP
KNTQEVLKNFKVDGKVSMNGENVNGMEEKDKECTTVIFTPSPTRSLKFDGVARGDKPPVE
LKKDPPSVELSLQRPATQSVHKEPTASPVELDGADSLQAEPSPSSATPAPSECPSPDQKQ
FKSTAACSSPVVKRLEFFPSPVPSEETASSKKDVKKVEIEPQKEAELPSTQEVIKAKPLE
EKGSVVLPFLKKLPETSQVTLHNSGLQEPPRGAMVPLRVRNHWRRSQFFSQSADSDTGDK
SNHFNFWSWDPEEERKRQERWQHEQERLLQEKYQKEQYKLKEEWEKAQREVEEEERRYYE
EERKIIEDTVVPFIVSSNSAELLSSSSSTTGGNKTVNSTDSNSCPGEGKQKEVTKQKKLL
WEQDSVSSLKSNESELWQEKRSGNKTLSGYPGTGILKGGSEQEHHVPVMERSSPARLNLP
LTQDENVFWSQQLLTKRSPQCAEDTRQRPFLGQSVGQQPSSAGEVRRAGYHENFRSGPSS
PCSLAALSQSPNRSVSGKKLCSTCGLPLGKGAAMIIETLSLYFHIQCFRCGVCKGQLGDA
ASGTDVRIRNGLLNCNDCYIRSRTAGQPTTL
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcctgggctggagctgggagaggttcagcctcctgccgagcccccccagcct
gagctggccttcaccgaggctcagaaatggatcgagcaagtgacgggcagaagttttggt
gagaaagattttcgttcaggattagaaaacggcattcttctgtgtgagttgctgaatgcg
ataaagccaggattggtaaaaaagatcaatagactaccgacccccattgcaggtttggat
aatattatattatttttacgaggctgcaaagaactgggacttaaagaatctcagcttttt
gatcctggtgatctgcaggacacatcgaacagagtaaccatcaagaacattgactatagt
aggaagctgaaaaatgtattagtcaccatttattggctagggaaagcagcaaacagctgc
acatcgtatagtggatcaaccctgaacctgaaggagtttgaaggcttcctggcacaaatg
agaaaggaaacagaggatattgagagccccaagcgcagcattcgtgacagcggctatata
gactgctgggactctgaacgcagtgattccctctccccgcctcgccacggcagagatgat
tcctttgacagtctggactcctttggctcccgctcgcagcagacaccgtctccagatgta
gtgctcagagggagtagtgatgggagaggaagtgactcagaaactgacctgccacacaga
aagatgccagatgtgaaaaaagatgatatgttggcaaggcggacctcacatggtgaacct
aaatcagctgtgccttttaaccagtacctcccaaacaagagtaatcagacttgctatgta
cctgctccgcttcggaagaagaaagctgaacgagaggagtaccgaaagagctggagcaca
gcaacgtctccgctcggagacagacctttcagcaaaccccaccctgaaaccatagaagaa
gaactgaatgaaacatcaagactgtgtgaaaaggagaaagtgggctccatgtctcctgaa
gcaagctcccttaaaaatcaattaggtgtgaatcaaagtgaagaaaactccatagatcag
tctccttcatgtagtgcaaaagaaacatcagtacccaaggggaaagatgtggaagagagg
agaaagttaagaagacttgaacaagctggtattaaggtcatgtcagcagcccagcgctat
ggcagtaaaaagccagtatgtgaagacaatggaagcaccccaaatatcatccttcgcaag
gacaaccccttcatgacacattatcaaggaaaggattctggttcagaagatgaagcagcc
agcagagttcctgatttagaaaaggatgattttgccacccggcgagccagaatgaatcaa
cccaagcacatagttccatttaactcctttttagttggaccttatacaagtaaagaggaa
ggtaaactggaagatgttaaaaagccagtgcagatggaaaaaaaggaacatgcaagaaga
agacgggtgcacatgacatcagtaaggcaagcagttacaagcaaagaggacccacttctg
caaaatgagaagactaagtcagaggaggaacagcaggtgaaagagcttgataatgagaga
gatgatttggcaaaacggaaatctcaaagcatccttcctcagctacaagaagatgtgttt
tttgtcaatgcctctataacaaaagcagatctggagacctggaaaagattgaaactgtca
gtggagcccagtgaagaagatttcagattttccagcaacactctgccaccaactgatacc
acagtgaaagcagtagcccatgatgattttgctgtccgcaaaaccagagcaaacagaaag
gctggtagccccaagcagaagtttgtgcattttgggccagtaactgagattgatcaacag
aagtgggacaagctcgttattggcagagcttcatccaagagtggaacagaagaggaaagc
aagaaatgcagtgtggaaagtctctctggtgttgaaagctctccttcaaccactgttgcc
agtcttgggtttgctgaagccagcagtgaagtatctgagccagaaaataagtccagtagt
gagggaggaatcaagtcggatacagatgactcttgcaggagaattccatctcctgtacca
gcttctgatgtcatctctgaggaacaaaccccatggagtttgagcaaacagcaagaaagt
accaaggaagaatgtgacaggaatttaccagatatagagagagatgatatgttggttaga
aggatgggaatttttccaaggcgtaccacaagctccattcccataaattgtcctcccttg
tcagtagctccttatctgctgcagcagcagcaagaggaggctgtagctcgtgaaaaggat
ttgaagactctgcaggaaggagaaagtactgtcacacaagaagagagtcaagaacagctt
gaaatccctcagctgcagagtgatggaacagaaaacaaaatgaaatttccagaccctcaa
agagatgacatgttagccagaagaactggagcttttcttaaacagcctgggcccagtgtt
aagcagttccttcccatgccattttcaaagcagcagaataagcagggcacagctacagaa
cttgagaagaaaaccacgaggcctgaaaaatgtccacaagtctacactaatagctctgga
aaaccttcaatagaaccacctcaagaacagcagcaaggacatgaggacagtctcccacct
acaggacaagatgagattactaatactgcccgtactgcccaagtggctgaagatgacaac
aatgaagtccacattggtcaaacatctaagcttcaggaggttgccgaggaaaacaaaatg
ggaacactttcatccaaggatgagcatctgcaaacattcggccccagaactgctgtgtct
gatgacgcagagagtatgagtatgtttgacatgagatgtgaagaagaagctgtggctcag
cctcatagcaaagctcgccatgagaagctgcagaatatacacaaccagctgaaagaggac
gagaccagatggcaagatgacctggctcggtggaagagtcgtcgaaggagcgcttcacag
gatttgattaaaaaggaagctgagagaaagaaaatggagaggttattggctggagacgga
acgaatgagcgtagaaaaagcatcaaaacctaccgagaaattgtggaggagaaagagaga
agggagcgggaacttcatgaggcatacaagaatgcaaagacacaggaggaggctgagagc
atcctccagcagtacactgaaagattcactatcagtgaggctgtccttgagcgtttgcag
atgccaaaaattctagaaagaagccattcagtggaaccaaattccccactgaaagaccca
aatcctctgagatatttaaggcaacagtcacttcctgctccaaaattcactgccacaatt
gaagcaaccattgttcccaccactgaactagagcccagcagttcaacaggacgcacatct
cccagcaaaagtgtctccaaggctgtgcctatgctgacacccaagccttactcacaaccc
aaaaatacacaggaagttttaaagaactttaaggtagatggaaaagtcagcatgaatgga
gaaaatgtcaacggcatggaagaaaaggataaagaatgtacaacagtaatatttactcct
tcaccaaccagatctctgaaatttgatggagtagccagaggggacaagcccccagtagag
ttgaagaaggaccccccaagtgttgagctcagtttacagaggcctgccactcagagtgtg
cacaaagagccaacagcctccccagtggaactggatggagctgacagcctgcaagccgag
cccagccccagcagtgcaacacctgccccctcggagtgcccatccccagatcaaaagcaa
ttcaagtcaactgcagcttgttccagccctgttgtgaagagattagaattttttcccagt
cctgtcccttcagaggaaactgcctcaagcaagaaagatgtaaagaaagttgaaatagag
ccgcagaaggaagcagagctcccttccacacaggaggtgattaaagcaaaacctctggaa
gaaaagggcagtgtagtgctgccatttttaaagaaactgcctgaaaccagtcaagttact
ctgcataactctggtctacaagagccgccccgcggggccatggttccgcttagggtccgc
aaccactggcggcgctcacagtttttctcgcagtcagctgattctgatactggtgataaa
tcaaatcatttcaatttttggtcctgggatccagaagaagagcgaaagcgccaggaaagg
tggcagcatgagcaagaacgcttgcttcaggagaagtatcagaaggaacagtacaagctg
aaagaggaatgggaaaaggcccagagagaagttgaagaggaggagcgtagatactatgag
gaggaacgaaagataattgaggatactgtagttccattcattgtttcttcaaactctgct
gagctcctctcctcttcttcctctaccactggaggaaacaagacagtgaactcaactgat
tcaaacagctgtccaggggaaggcaagcaaaaagaagttacgaagcaaaaaaagctgctc
tgggagcaggacagtgtgtcatctctgaaaagcaatgaaagtgaactctggcaagaaaag
aggagtggaaataaaacactctcaggatacccagggactggtatcttgaaaggaggaagc
gaacaggagcaccatgtgccagtgatggagcgcagctcacctgccagactgaatctgcca
ctgactcaggatgagaatgtcttctggagtcagcagctgctgacaaagcgatctccacag
tgcgcagaggacactcggcagaggccgttcctgggccagtctgtgggacagcaaccaagc
tctgcaggggaagtgaggagggcaggctatcatgagaacttccgatctgggccatcatct
ccctgctctcttgctgctctgagtcagtcacccaacaggtctgtcagcgggaagaagctt
tgttctacctgtggtctccctcttggaaaaggagctgccatgattattgaaacactcagt
ctttatttccatattcagtgcttcaggtgtggtgtttgcaagggtcagctgggagatgca
gcgagtggcacggatgtcaggattagaaatggtctccttaactgcaacgattgttatatc
cgatccagaactgctggacagccaactacattgtga
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integrated database retrieval system
