Taeniopygia guttata (zebra finch): 100223354
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Entry
100223354 CDS
T01082
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03013
Nucleocytoplasmic transport
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100223354 (UPF1)
03015 mRNA surveillance pathway
100223354 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100223354 (UPF1)
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100223354 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100223354 (UPF1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100223354 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100223354 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100223354
NCBI-ProteinID:
XP_030112989
Ensembl:
ENSTGUG00000001057
LinkDB
All DBs
Position
28:complement(3192895..3217026)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagaccccgcccgggccgggccaggcggggccggcgcagggccagggc
ccccccggcgcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaatggagccgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctccctgtgcac
gcctgcagttactgtggcatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtggaaacacctctggcagccacatcgtgaaccacctggtg
agagccaagtgcaaggaggtgactctgcacaaggacgggcccctgggtgagaccgtcctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctgtgcaggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtgaagatcccctcggagcaggagcagctccgggcccggcagatcacagcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggagccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaacatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggctcccctctggaagggaattgggcatgtgatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gtgggagctcccgtggaggtcactcacaacttccaggtggactttgtgtggaaatccact
tcctttgacaggatgcagagtgctctgaagacgtttgcagtggacgagacctcggtgtct
gggtacatttaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacggcccagggcctccctgatctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacatcgctgtggatcagctgacagagaagatccaccagactggc
ctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagagctttcctccgctgacgagaagcggtaccgggcgctg
aagcgcactgcggagcgggagctgctgatgaacgcggatgtgatctgctgcacgtgtgtg
ggagctggagaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagccggagtgcatggtgcccgtggtgctgggggccaagcagctgatc
ctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaaggcagccaaggcg
gggctgtcgcagtcgctgtttgagcggctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgag
ggctcgctgcagaacggggtcaccgcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggacaggaggagattgcc
agctcaggcacctcttacctgaacaggacggaggctgccaacgtggagaagatcaccacg
aagctgctgaaggctggggccaagcctgaccagattggcatcatcaccccctacgagggg
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaaactctac
caggaagtggaaattgcaagtgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaatgagcaccagggcattggcttcctcaacgaccccaggagg
ctcaacgtggccctgacaagagccaggtacggggtgatcattgtggggaaccccaaagcc
ctgtccaagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgcgggagagcctcatgcagttcagcaaaccccgcaag
ctcgtcaacaccatcaaccccggtgcccgtttcatgaccactgccatgtatgatgcacga
gaggccatcatccctggctctgtctacgaccgcagcagccaagggcgtccatccaacatg
tacttccagacccacgaccagattgggatgatcagtgctggccccagccacgtcactgcc
atgaacattcccatccccttcaacctcgtcatgcccccgatgccacccccgggctacttc
ggccaggccaacggccccgctgcaggccgtggggctcccaaggggaagacgggccgtggc
gggcggcagaaaaaccgctttgggattcctggcaccagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcacagatgagtcagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
