Taeniopygia guttata (zebra finch): 100223542
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Entry
100223542 CDS
T01082
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100223542 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tgu01001
]
100223542 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tgu04054
]
100223542 (CIITA)
Enzymes [BR:
tgu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100223542 (CIITA)
Protein kinases [BR:
tgu01001
]
Serine/threonine kinases: Other
TAF1 family
100223542 (CIITA)
Pattern recognition receptors [BR:
tgu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100223542 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
NB-ARC
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
AAA_19
nSTAND3
nSTAND6
Motif
Other DBs
NCBI-GeneID:
100223542
NCBI-ProteinID:
XP_030141085
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All DBs
Position
14:complement(10312623..10350332)
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AA seq
1124 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCTFFDTKSSGDEEGDFSTDLEVEASNYEQLNNVDFP
YENGDGFYPCCNTTDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDM
KIQSCLKRTFLGSAAESYCDASEPKYKKIVEVSAASAGNGSFFAMPLNSHPVNCTSLTNQ
YMSCSVPAAHGLERSLIIPGLSEPLTTECQPVSVKGYQENLGLAGPPQQIFNFVLENGTS
DVIVYPVLTSSMETFMSPSFPVNLCAQHTYATSPGIPDAATDRLAHLEEFQEVQDSIISS
EEPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDRTLVQSQTETKTGKNSAK
AMEKELVTCSPQEKEKTAIDRSQIFQIPQRKDLETKVIVVLGKAGMGKSILIQKICQDWS
NGEFSQFEFVFWFDCKQISLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPGKVLLIF
DGFKGLHDHENFPRCSASQPEKDLCSIKELLSGLIQKKVLNGCTLLFTARPKDKLYQYMS
KVDKTIEIVGFSPQQRELYITKYFEESLYCDSALKLIKECEYLFSHCYSPVMCRFVCFLC
ETVLEMGENSLPSTLTEVFLKFFQQKIMFMQTDVTTTQNQESLATLARVAWCLGEKHQSA
MKSDLIPSKEVKEFALKYGFFLPFALPRHSDSEEEEFGSTFSDFVIQNFLCALHLLLAEE
LKDKNLTKYLSFLSKKKKPYNWLDLMPRFLAGLMFLQDDPSFCSLSNEDEKQSTKKQKTL
LKYIRRLQINTLCPERLLELLCCVYETQNNYLLQHVALRLEPELSFLGIVLTPPDVHVLH
SVLKRSRKEFSLDLRNSSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKDYELLK
ASTEKFVLDPFKAKTMKDISDLSDLVELQEKMMNCVQEASGCTSYEIPAIRNLRKLEFAL
GPACGLQGLLKLVKILAAFPSLQHLDLDALSENSIGDEGAKSLSEVFPTLTSLETLNLSQ
NKITDVGAENLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKIT
GVGAQQLTDSLRKCPHMKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgat
ccattgcatctgtgtactttctttgatactaagtcatctggagatgaagaaggtgacttc
tctacagatcttgaagttgaggccagcaactatgaacagttaaataatgtggatttccca
tatgaaaatggagatgggttctacccctgttgcaacaccacagatgcttatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggtcgaagacattttt
gcagggaaccttattttggatgacattgctgctgaaaacactgagaaatttcctgacatg
aagatccagtcatgtcttaaacgaactttcttaggctctgcagcagaaagttactgtgat
gcttcagaacccaaatataagaaaattgtggaagtctctgcagcttctgcagggaatggc
agtttctttgctatgcctctcaacagccacccagtgaactgcacctctctaactaaccag
tacatgtcctgttctgttcctgctgcccatgggctggaaagaagcctcataattcctgga
ttgtcagaacctttgaccacagagtgccaaccagtcagtgtgaaagggtaccaagagaat
ctaggcttggcaggtcctcctcagcagatatttaactttgttcttgaaaatggtacatct
gatgttatagtatatccagtgctgacatcttccatggaaacattcatgtctccaagtttt
ccagttaatttatgtgcacaacatacgtatgccacaagccccggaattccagatgcagca
acagacagattagcacatttagaggaatttcaagaagttcaagattccataatttcttct
gaagaacctttcaaaagaccagagcaagtggaaactttctgttcatcccttaaggattat
ttccgagacacctgcaaatctgtgaccatggagcgggaagtaaatctggatcacctgttc
attgataggacacttgttcaaagtcaaactgaaaccaagactggaaagaatagtgcaaaa
gcaatggaaaaggagctggtaacctgcagcccgcaagagaaggaaaagacagccattgat
agaagccaaatatttcaaatcccacagcgtaaagacttagagactaaagtgattgtggtt
ctgggaaaagcaggaatgggcaaaagcattctcattcagaagatctgccaggactggtcc
aatggagagttttctcagtttgaatttgtattttggtttgactgcaaacaaataagtttg
cctgagaagcaatacagcctgaaggagttgcttcttgaattttttgtaaaacctcaagag
ggaagcaaagagatctttgagtatatgttgcaaaatcctggtaaagtccttctgattttt
gatggttttaaaggattgcatgatcatgagaattttcctcgttgctcagccagccagcct
gaaaaggatttatgcagtataaaggagctgctctcaggactcatccaaaaaaaggtgctc
aatggctgtactttattatttacagcaagaccaaaagacaaactgtaccagtacatgtcc
aaagtggataagactattgaaattgtaggattttctcctcagcagagagaattgtacata
accaaatactttgaagaatcactctattgtgatagtgcactgaaattaatcaaagagtgt
gagtacttgttcagtcattgttacagtcctgttatgtgtagatttgtttgtttcctctgt
gagacagtgcttgaaatgggagagaacagtcttccttcaactcttactgaagtcttcctg
aaattttttcagcagaagatcatgtttatgcaaacagatgttacaaccacacaaaatcaa
gagagtcttgctaccctagctcgtgtagcctggtgtcttggagaaaagcaccaaagcgcc
atgaaaagtgatcttattccttctaaggaagttaaagagtttgctctgaagtatgggttt
ttcctgccatttgcattgcccagacattcagatagtgaagaagaggaatttgggagcaca
ttctctgattttgtaattcagaatttcttgtgtgcacttcaccttttgttagcagaagag
ctcaaggataaaaatctaacaaagtacttgtcttttctatccaagaagaaaaaaccttat
aactggttagatttaatgcctcgatttttggctggtttgatgtttctccaggatgacccc
tccttctgctctctttcaaatgaggatgaaaaacagtcaaccaagaagcagaagacactc
ttgaaatacatcagaaggctgcagattaatactctctgtccagagaggttgctggagctt
ttatgttgtgtttatgaaacacagaacaattatcttctgcagcatgtggccttgagactt
gagccagagttgtcttttctgggcatagttcttacaccacctgatgtccatgtactgcac
tctgttttgaaaaggtcaagaaaagagttttccttggatttgcggaacagcagcattgac
atgcaagggctgcaagccttggtcagcctaaggaatgtgacatcattcagggcttccctc
agtgacacagtcagactctggaaatctttggaacagacaaaagactacgaactgctgaaa
gcatccacagagaaattcgttcttgatccctttaaggcaaagacaatgaaggacatcagt
gacctctctgaccttgtagagttgcaggagaagatgatgaattgtgtgcaagaagcatct
ggttgcaccagctacgaaattcctgccatcagaaacctcagaaaacttgaatttgcgctg
ggtccagcatgtggccttcaaggattgctaaaactcgtgaaaattcttgcagcatttcca
tcacttcagcatttagaccttgatgctctgagtgaaaatagcataggagatgaaggagca
aagagtctatctgaagtctttccaaccttgacatcactagaaacattaaatttatcacag
aataaaataacagacgtgggtgcagagaatcttgctacagctctcccttccttgtcttcc
ttaaaaacactaagcttatacaataacaacatttgtgattttggagcagaaaatctggca
aaggttcttcctgcaatgacatctttaagagtgctagatgttcagtataacaaaataact
ggtgttggagcccagcagctgactgacagcctacgaaaatgtccccatatgaagaacttg
gtgatgtggaatcctaccattccctatggagttcttgaacaccttcaccagctggactcc
aggatcagtgtgtag
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