Taeniopygia guttata (zebra finch): 100223902
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Entry
100223902 CDS
T01082
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100223902 (PRPF39)
Spliceosome [BR:
tgu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100223902 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_12
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
100223902
NCBI-ProteinID:
XP_030131185
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All DBs
Position
5:complement(61072678..61094352)
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AA seq
707 aa
AA seq
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MSTLRHLPAPAAVLHKSPVPEWKSKAGPDRKAGWIQSHSAAMENAESTEEEQPTVGNESA
EPRAESAPEEQHMDFSTEIMSVTEMEQSPDSSPDLNEDNTQESEIPNIESLQTTDIEADF
PPDFDKFWKVVEDNPQDFTGWVYLLQYVEQENHLPAARKAFDRFFSHYPYCYGYWKKYAD
LERRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTLDPADPETNSTIRGAYEHAVL
AAGTDFRSDRLWEMYINWENEQGNLREVTSIYDRILGIPTQLYSHHFQRFKEHIQNNLPR
DFLTTEQFVQLRRELAAASGHSGEDGDELPCGTEDITDPAKLITEIENMRHRIIEIHQEI
FNHNEHEVSKRWTFEEAIKRPYFHVKPLEKIQLKNWKEYLEFEIENGTHERVVVLFERCV
ISCALYEDFWIKYAKYMENHSIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQGNIDEA
RRILKTFEECILGLAMIRLRRVSLERRHGNMEEAEQLLEDAVRNAKSISEASFYAIKLAR
HLFKVQKNLPKARKVLSEAIELDKENTKLYLNLLEMEYSGDLKQNEENILSCFDKAIHGA
LSIKMRITFSQRKVEFLEDFGSDVNKLLDAYDEHQALLKEQETLKRRAENGSEEPDEKKL
LTEEAGLASAQLMDGDMQVNQAAYNYNAWYQYNYQNAWNYGQYYHTT
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacacttagacacctccctgctcctgcagccgttctgcacaaaagcccagttcct
gagtggaaaagcaaagcaggacctgacagaaaagctggctggatccagtcgcacagcgct
gccatggagaacgccgagagcacggaggaggagcagccgactgtgggcaatgagagcgcg
gagccccgcgccgagagcgcgcccgaggagcagcacatggacttcagcaccgagatcatg
agtgtcaccgagatggagcagtccccggacagctccccggacctcaacgaggacaacacg
caggagagcgaaattccaaacattgagagcttacagaccacagatatcgaggctgacttc
cctccggattttgacaagttttggaaagtagtagaggacaatccgcaggatttcacagga
tgggtttatctactgcagtacgtagagcaggagaaccacttgccagcagccaggaaagcc
tttgacaggtttttctcacactacccctactgctatgggtactggaagaaatacgcggac
ctggagaggcgccacgacaacatcaagcagtcagatgaggtctatcgccgagggcttcag
gcaattcctcttagtgttgatctttggatacattatataaacttcctaaaggacacattg
gaccctgctgatcctgaaactaacagtaccatcaggggagcctatgaacatgcagtgctg
gctgctgggacagatttccgttctgacagactctgggaaatgtatataaactgggaaaat
gagcagggaaacctaagggaagttacatccatctatgaccgcatcctgggaatcccaacg
cagctctacagccaccacttccagaggtttaaagagcacatccagaacaacctgccccga
gacttcctgaccacggagcagtttgtgcagctgcgccgggagctggcggctgccagcggc
cacagcggcgaggacggggacgagctgccctgcggcaccgaggacatcaccgaccccgcc
aagctaatcactgagatagagaacatgaggcacagaatcattgagatccatcaggagata
ttcaaccacaacgagcatgaagtcagtaagaggtggacgtttgaggaagcgatcaagagg
ccttactttcatgtaaaacctctggagaaaattcagctgaaaaactggaaagagtactta
gagtttgagatagagaatggcactcacgagcgagtcgtggtcctctttgagagatgtgtc
atttcatgtgccctctatgaggacttctggatcaagtatgccaaatacatggagaaccac
agcatcgagggcgtgaggcacgtgtacagcagggcctgcaccatccacctgcccaagaag
cccatggtgcacatgctgtgggcagccttcgaggagcagcagggcaacattgatgaagcc
agaaggatcctgaagacgtttgaggagtgcatcctggggctggccatgatccgcctgcgc
agggtgagcctggagcgccggcacggcaacatggaggaggcagagcagctgctggaagat
gctgtcaggaatgccaagtccatcagtgaagcctccttctatgccatcaaactcgcccgg
cacctcttcaaagtgcagaaaaacctgccaaaggcaagaaaagtgctgtcagaagccata
gaactggacaaagaaaacaccaaactgtacctgaacctgctggagatggagtacagtggt
gacctcaagcagaacgaggagaacatcctgagctgctttgacaaggccatccatggggcc
ttgtccatcaaaatgaggatcacgttctcacagagaaaagtggaattcctggaagatttt
gggtctgatgtgaacaagctcctggatgcctacgacgagcaccaggcactgctgaaggag
caggagacgctgaagcggcgggcggagaacggctcggaggagccggacgagaagaagctg
ctgacggaggaggcggggctggcgtcggcgcagctcatggacggagacatgcaggtcaac
caggctgcctacaactacaacgcctggtaccagtacaactaccagaacgcctggaattac
ggacagtattaccacacaacctga
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