Taeniopygia guttata (zebra finch): 100224195
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Entry
100224195 CDS
T01082
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tgu04121
]
100224195 (PDZRN4)
Enzymes [BR:
tgu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100224195 (PDZRN4)
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
100224195 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
100224195
NCBI-ProteinID:
XP_012424386
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All DBs
Position
1A:27329375..27558025
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AA seq
777 aa
AA seq
DB search
MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRAPATK
AHSSSQDVQLMDASTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPVEHEFY
EGNEYLSTLPADADRAEDFEYEEVELCRIGSQEKLGLTVCYRTDDEEDTGIYVSEVDPNS
IAARDGRIREGDRILQINGQDVQNREEAVALLSSEECRKIVLLVARPEMQLEEGWLDDER
NEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDTATSSSNNHEKDSGVGPTD
ESLRNEESSEQENATEEQNSATLQSKRDLGHSQDTLGSVELQCNESLVSGEYIESDFIGN
PEEECERFRQLLELKCKIRNHGEYDLYYSSSMIECNRREQDGVEHELQLLNEELRNIELE
CQNIMQAHRLQKVRDQYGDIWALHEESFRNYNTSTDVQRGKLDDIMEHPEKSDKDSSSAY
NTAESCRSTPLTVERSPDNSLHRMISITNRKNLRTTIVANQSSSGQSNRETTSAKTKPTE
QNSAAENTVLASESSKFTDQERQSSEHIPYLSPYHSSSYRYGNIPAHAKHYQSYMQLIQQ
KSAVEYAQSQLSLVGMCKDSQKCAEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIK
EERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGS
EGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctctgcacttttcagaagagagaggaacactacaaactgctctatgaa
gtttcacaggtcaatgggaaggacctctccaaggccactcacgaagaagcagtggaagct
ttccgcaatgccaaggagcccattgtagttcaggttttgcgacgagccccagctaccaaa
gctcacagtagctctcaggatgttcagctcatggatgctagcactcagactgacatcact
ttcgagcatatcatggctctggccaagctaaggccttccacaccaccagttcctgatatc
tgtccttttctgctttcagatagctgccattctcttcacccagtggagcatgaattttat
gaaggtaatgagtatctttccaccctgcctgctgatgcagatagagcagaggactttgag
tatgaggaggtggagctgtgccgcattggcagccaggagaagctggggctgactgtctgt
tacagaaccgatgatgaggaggacacgggaatctatgtcagtgaggttgatccaaacagc
attgctgccagagatggacggatccgtgaaggagaccgcattttgcaaataaatggccaa
gatgtccagaatagggaagaggcagtggcattgctctccagcgaagaatgcaggaaaatt
gtgttgctggttgcgaggccggagatgcagctggaggaagggtggctggatgatgaaagg
aatgaattcttagaggagttaaacttggaaatgctggaagagcagcataatgaagcgatg
cagtatacagccaatgaggtggagcagccaaagaaacatgaagaggaagatggcactaca
gacactgcaacctcatcatccaacaatcatgagaaggacagtggggtagggcctacagat
gaaagtctccgaaatgaggagagctcagagcaagaaaatgcaactgaggagcagaacagt
gctaccctgcagagcaaacgggatctgggccacagccaggacacattaggcagtgttgag
ctccagtgcaatgaaagcttggtgtctggggaatacattgaatctgatttcataggaaac
ccagaggaggaatgtgaaaggtttcggcagctgttggaacttaagtgcaagattcgaaac
catggggagtatgatctttattactcaagcagcatgatagaatgcaatagaagagagcaa
gatggagtggagcatgagctgcagctactcaatgaggaactgaggaacattgaactcgaa
tgccagaatattatgcaagctcacaggctccaaaaggtgagagatcagtatggagacatt
tgggctttacatgaggaaagtttcaggaattataataccagcacagatgtacaaagaggc
aaactggatgacatcatggagcaccctgagaagtctgacaaggacagttccagtgcctac
aacactgctgaaagctgcaggagcactccgctgactgtggagcgatcccctgataactct
ctccacaggatgatcagcataaccaacaggaaaaacctgagaaccacaattgttgctaat
cagtcatcctcaggacaaagcaacagggagacaacctcagccaaaaccaaacccactgag
caaaacagtgctgctgagaatacagtgctggcatcagaaagcagcaaattcacagaccag
gaaaggcaaagcagcgagcacattccctatttgtctccatatcacagttcttcttacagg
tacgggaacatccctgctcatgcaaagcattatcaaagctatatgcaactgatccagcag
aaatctgctgtggagtacgcccagagccagctcagcctggtgggcatgtgcaaagactcg
cagaagtgtgcagagcccaagatggaatggaaagtgaaaataaggagtgatgggacgagg
tacattacaaagagaccagttcgagacagaatcctgaaggaacgtgccttaaaaattaaa
gaggagcgcagtgggatgacaacagatgatgatacgatgagtgagatgaagatgggtcgc
tactggagcaaagaagagcggaagcagcatttggtgcgcgctaaggagcagaggaggcgg
cgggagttcatgatgaggagcaggctggagtgtcttaaggaaagtccgcagagtggcagc
gagggcaaaaaagaaatcaacataattgaactgagtcacaaaaagatgatgaaaaagaga
aacaagaaaatcttggacaactggatgacaatacaagaactgatgacacacggtgctaaa
tccccagacggcacaagagtgcacaatgcctttttatcagttactactgtatga
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