Taeniopygia guttata (zebra finch): 100225058
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Entry
100225058 CDS
T01082
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tgu00535
]
100225058 (COL15A1)
Proteoglycans [BR:
tgu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100225058 (COL15A1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
100225058
NCBI-ProteinID:
XP_030121481
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Position
2:complement(72291784..72415528)
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AA seq
1297 aa
AA seq
DB search
MLSWHAWWTWDLSLLLFGLSIHAGAAAQIIEERGSKRHLDLTELIGVPLPPSVYFVTGYG
GFPAYSFGPDSNIGRLTSAIIPSPFYRDFAIVVTVKPNSDHGGVLFAITDAFQKTIYLGL
RISPVDDSTQRIIMYYTEPGSHISREAASFKVPVMTNRWNKFTVTVEGNDIALFMDCEEY
QRLQFQRPARTLVFESGSGIFVGNAGATGLEKFTGSIQHLTIKSDPRATEDHCEDDDPYA
SGDSSGNGRIQEHDSSEAQEALAPSRLPIRPEDTLAEPVEAPPTILAYLEENDFSGNHRS
EETSEADKFKEQAVMETGQGNSESTTVTQKMLREEDGSGADVLPGVSREEGQKGQEEEDG
STESIGGSGIDVENKDQRPPESPGKLGQLGQPGIPGKNGLPGKNGLQGLPGLKGKAGPKG
EKGDPGEGLPGPPGLPGPTGPSAPSRGLNRLEPEELGSGDSDRETEILRGLPGPPGPPGL
PGLPGNPAPDSSVGPPGSPGEDGASGEPGPAGPQGPPGCDGVVGPPGWKGEKGDQGLPGS
AGPKGDAGVTGSIGPKGEAGPIGSPGKPGPPGPPGPPGPPGPPGLSYSLGFEDMEGSGSI
NLLSESRIPGSRGPKGSAGRPGHRGPLGPKGERGNIGPPGSKGMPGTDGKPGFPGIAGHP
GEVGPKGEKGDPGLRGEPGQDGRSIVGPPGPPGPPGSVIAIPELLLNNTDGISNFAEIKG
LLGPPGPDGKPGLPGFPGPRGPKGDTGLPGSQGPKGQQGEKGEPGAIISADGSLTELLGR
KGEKGEAGVMGPVGPMGPIGPTGPKGELGFPGRPGRPGLNGLRGVKGDRGEALNGLPGLP
GPPGPPGPPGRILFIKGVSTVFPVPPRPHCKMPVNPPYTGNQEVLNDHGAKANGDSWELH
SSAHLKGEKGDRGAPGPPGPPLPPSYFSHFINSIKGEKGDNGVTGVKGEKGEPNGGFFLT
GPPGPPGRPGLIGPKGDSVVGPRGPPGLPGLPGLPGYGKIGPPGPPGPPGPPGPPAIYGS
AAAMPGPPGPPGEPGSPATRNLVTTFQNIEGMLEKVHYVAEGTLIYLRETSEVFIRVQKG
WRKLQLGELIPIPADSLPPPAISSHGIQSIPALRPISNMKNGKPALHLVALNFPLSGDMR
ADFQCFQQAQLAGLTSTYRAFLSSHLQDLATVVRKADRHNLPVVNLQGETLFSNWESIFD
GNGGQFNIHVPIYSFDGRNVMTDSSWPQKIIWHGSTANGIRLVSNYCEAWHTADMGAIGQ
ASPLNTGKLLDQKVYSCNNQFIVLCIENSFVSDPQGK
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgctctcgtggcatgcctggtggacctgggacttgtcgctactgctctttggcttgtca
atccatgctggtgcagcagctcagatcatagaagaacgaggctcgaaaagacaccttgac
ctcacggagttaataggagtccctcttcctccttctgtctactttgtcacgggatatgga
gggttcccagcttatagctttggtccagactccaacatcggccggctgaccagtgctatc
ataccgtcacctttctacagagattttgctattgtggtcaccgtgaaaccaaacagtgat
catggaggagtgctctttgcaataacagatgccttccagaaaacaatctacctaggactg
aggatttcacccgttgatgatagcacccagagaataatcatgtactacacagagcctgga
tcccatatctcccgagaagctgcttcctttaaagtgccagtgatgactaacaggtggaat
aaatttactgtgactgttgaggggaatgatattgctttgttcatggactgtgaagagtat
cagaggcttcagtttcaaaggcctgctcgaaccttggtatttgaatctggctctggcata
tttgttggtaatgcaggagccacaggcctggaaaagttcacaggctcaattcaacatctg
acaatcaaatctgacccaagggctactgaggatcattgtgaagatgatgacccttatgct
tcaggggacagcagtggcaatggccgcattcaagaacatgacagttctgaggcacaagaa
gcccttgcaccttcccgtcttcccataaggcctgaagatacgttggctgagccagtggaa
gcgcccccaaccatattggcttatttggaagagaatgatttctctggaaatcacagatca
gaagaaacctcagaagcagataaatttaaagaacaagctgtcatggaaactggacaaggc
aacagtgagtctaccactgtcacacagaaaatgttaagagaagaagatggctctggtgct
gatgttttgccaggagtaagcagagaggagggccagaaaggtcaggaagaagaggatgga
tccacagagtctataggagggtcaggaatagatgtggaaaataaagatcaaagacctcct
gaatctcctgggaaacttgggcaacttggtcagcctggcattcccggtaaaaatggacta
cctggtaaaaatggacttcaggggttgccaggactgaaaggaaaagcaggccccaaaggt
gaaaagggtgatcctggtgagggattgccaggaccccctggactaccaggacccacagga
ccatctgctccttccagaggattaaatagactagaacctgaagaattgggttctggagat
tctgatagagagacagagattttaaggggtcttccagggccaccaggccctccaggactg
cctggtcttccaggaaacccagcacctgattcaagtgtaggacctcctgggtcaccagga
gaagatggagcttcaggggagccaggccctgcaggccctcaaggtcctcctggttgtgat
ggagtggttggcccaccaggatggaagggagaaaagggtgatcaaggtctgcctggttct
gctggtccaaagggtgatgctggagttactggatcaataggccctaaaggagaagctggt
cctattgggtctcccggaaaacctggaccacctggacctcctgggcctcctggacctcct
ggaccaccaggactaagttacagcttgggatttgaggatatggaaggatcaggtagcatc
aacctgttaagtgaatcaagaattcctggatcaaggggaccaaagggttctgcaggaaga
cctggacatcgtggacccttaggaccaaagggagaaagaggcaacataggtcccccaggt
tcaaaggggatgccaggcacagatggaaaaccaggcttccctggcattgctgggcatcct
ggagaagtgggtccaaaaggagagaaaggtgacccaggacttcggggtgaaccaggacag
gacgggaggagtattgtgggaccaccaggaccaccaggaccaccagggtcagtcatagca
atacctgagttacttctcaataacacagatggaatttctaattttgctgaaattaaagga
cttcttgggccgccagggccagatggcaagccaggtctaccaggatttcctggccctcga
ggtccaaaaggtgacactggtttgcctggatcacaaggacctaaaggacagcagggtgaa
aagggagaaccaggagctatcatttctgctgatggatctttaactgaattattaggaaga
aaaggagagaagggtgaagctggagtgatgggaccagtgggaccaatgggaccaatagga
cctactggacccaaaggagagcttggcttcccaggacgtccaggccgtccaggactgaat
ggtctgagaggtgtgaaaggtgatcgaggtgaagcacttaatggccttcctggcttgcct
gggcccccagggccccccggacctccaggacgtatactttttatcaaaggagtaagtaca
gttttcccagtccctcccaggcctcattgcaaaatgccagtgaaccctccctatactgga
aatcaagaagttcttaatgaccatggcgccaaagcaaatggagattcctgggaactgcac
agttcagcacacttaaagggagaaaagggagacagaggtgctccaggaccaccaggtcca
cctctgcctccatcatatttcagccattttattaatagcataaagggtgaaaaaggagac
aatggagtcaccggtgtaaaaggagaaaaaggagaaccaaatggagggttttttctgaca
gggcctcctggaccacctggaagaccaggattaattggaccaaaaggggactcagttgtt
ggacccagaggacctccaggattacctggcctacctggcttaccaggttatggaaaaatt
ggacctcctggcccacctggaccacctggaccaccaggcccccctgcaatatatggctca
gcagctgcaatgcctgggccaccaggtcctcctggagagccagggtcacctgccaccagg
aatctggttacgacattccaaaacattgagggtatgttggaaaaagttcattatgtagca
gaaggtacactaatctatctgagggaaaccagcgaggtttttatccgtgttcagaaagga
tggagaaaattgcagcttggtgagctaattcctatccctgctgacagccttcctcctccc
gccatatcaagccatggaattcagtctattccagcattgagaccaatatcaaatatgaag
aatggaaaaccagcattgcatttggtggctttgaacttcccattgtctggtgacatgcga
gcagattttcagtgttttcagcaggcccagcttgctggtttgacatccacctacagagcc
ttcctctcatcacacttgcaagatctggccacagttgtcagaaaagcagaccgacacaat
ttgccagtagtcaatcttcagggagaaacccttttcagtaactgggaatctatatttgat
ggaaatggtggacaattcaacattcatgttccaatatactcctttgatggcaggaatgtc
atgactgattcatcttggcctcaaaaaataatatggcacggttcaactgcaaatgggatc
cgactggttagcaactactgtgaagcctggcacacagctgatatgggagctataggacaa
gcatcgcctctgaacacagggaaacttcttgaccagaaagtatatagctgtaataatcag
tttattgttctctgtattgaaaacagttttgtatctgatccccaaggaaaataa
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