KEGG   Taeniopygia guttata (zebra finch): 100225201
Entry
100225201         CDS       T01082                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
tgu  Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tgu03036]
    100225201 (KDM4B)
Enzymes [BR:tgu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     100225201 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     100225201 (KDM4B)
Chromosome and associated proteins [BR:tgu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100225201 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD SLX1_C DUF7141 Tudor_3 DUF4537
Other DBs
NCBI-GeneID: 100225201
NCBI-ProteinID: XP_030112469
Ensembl: ENSTGUG00000000775
LinkDB
Position
28:4554276..4626579
AA seq 1090 aa
MGSENPSPQNPGCKIMTFRPSLEEFRDFGRFIAFMESQGAHRAGLAKVIPPKEWKPRRTY
DDIDDMVIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVDEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDMVKISMDVFVRVLQPERYELWKQGKDIAVLDHMKPTALSSPELDAWNE
TKAELKAKLLRRIGDEEEDNKHRSHRKRSQPRRHKTEDQKSLGDVMAIETALEDVKVKEE
LKRGPDLEEEERSKGMEGEAESKAKARPPKAKGERKKKQLFPPQPPVPPPGPIPAPQPPP
EAGPGAARPPGPPSAPGTEQGRPAAPLNVVQPSEAPAEEDDFKPRPIIPMLYVVPRSKKV
VFDKEHMSCQQAFEQFATQKGLGWREQGPGKEQDGAEAERAELAAEAASAFSKMKMEIKK
SRRHPLGKPPTRSPLSVVKQETSSDEEMFPFSGEEDMSDPEALKSLLSFQWKNKALNFPA
ERKFNAAAALSEPYCAVCTLFYPYNQSSQVEKEAAPISTGEPSSFVHLSKCGQKTKPLIP
EMCFTSSGENTEPLPSNSYIGEDGTSPLISCAKCCLQVHASCYGIRPELVNESWSCSRCS
AGAWAAECCLCNLRGGALQMTTDGRWVHVICAIAVPEARFLNVIERHPVDISAIPEQRWK
LRCVYCRKRMKKVSGACVQCSYEHCSTSFHVTCAHAAGVPMEPDDWPYVVSITCFKHKAA
NQNVPFRREVALGQTVITKNRNGLYYRCRVIGTSTQTFYEVNFDDGSYSDNVYPESIISR
DCIQMGPPLEGELVQLQWTDGIIYKAKFIAAQISQIYQVEFEDGSQLMVKRGDIYTLEEE
LPKRVKSRLSLSTGAPQEDAFLGDEVRAAKRPRLGNPRNPEEYGQTPDYLAFMESLLQTQ
YQPGTQSNMF
NT seq 3273 nt   +upstreamnt  +downstreamnt
atggggtcagaaaacccgagcccgcagaaccctggctgcaagatcatgaccttccggccc
tcgctggaggagttccgcgacttcgggaggttcatcgccttcatggagtcccagggagcc
caccgggcagggctggccaaggtgatcccccccaaggagtggaagccgcggcggacgtac
gatgacatcgatgacatggtgatcccggcccccatccagcaggtggtcacgggccagtcg
gggctcttcacccagtacaacatccagaagaagcccatgaccgtgggcgagtaccggcgc
ctggccaacagcgagaagtactgcacccctcgccaccaggattttgaggacctggagcgc
aagtactggaagaatctcacctttgtgtctcccatttatggggctgatatcagtggctcc
ctgtatgatgcagacgtggatgagtggaacattggcaatctgaacaccctcctggacatg
gtggagcacgagtgtggcatcatcatcgagggtgtgaacactccctacctctactttggg
atgtggaagacaacttttgcttggcatacagaggacatggatctctacagcatcaactac
ttgcattttggggagcccaaatcctggtatgccattcccccagaacacggcaagaggctg
gaacgcctggcaaaaggatttttcccaggaagctctcagggatgtgatgctttcctccgt
cacaagatgaccctcatttctccctccatcctgaagaaatacgggattccctttgacagg
atcacccaggaagctggggagtttatgatcacatttccttatggttaccacgctggcttc
aaccacggcttcaactgcgccgagtccaccaacttcgccaccctgcgctggattgactat
ggcaaaatggcaacacagtgcacgtgccgcaaggacatggtgaagatctccatggacgtg
tttgtcagggtgctgcagcccgagcgctacgagctctggaagcagggcaaggacatcgct
gtcctggaccacatgaagcccacggccctgagcagccccgagctcgacgcctggaacgag
accaaggcagagctgaaggcaaaactgctccgcaggataggagatgaggaagaggacaac
aaacaccggtctcacagaaaaaggagtcaacccagaagacacaaaacagaggatcagaag
tctcttggggatgtcatggctattgaaactgccttggaagatgtgaaagtaaaagaggag
ctgaaaagggggccggatctggaggaagaggagagaagcaaagggatggagggagaagca
gagagcaaggccaaggcgcggcccccgaaggccaagggcgagcggaagaagaagcagctg
ttcccccctcagccccccgtgccgcccccggggcccatcccagccccccaaccacctccc
gaggctggcccgggggcggcacggcccccgggacccccgtcagccccgggcacggagcag
ggccggcccgcggcgcccctgaacgtggtgcagccctcggaggcgccggccgaggaggac
gacttcaaaccacggcccatcatccccatgctgtacgtggtgccccgcagcaagaaggtg
gtgttcgacaaggagcacatgtcctgccagcaggccttcgagcagttcgccacgcagaag
gggctgggctggcgcgagcagggccccggcaaggagcaggacggcgccgaggcggagcgc
gccgagctcgcggcggaggctgcttctgccttctccaagatgaagatggagatcaagaag
agccgccggcacccgctgggcaagcccccgacgcgctccccgctgtccgtggtcaaacag
gagacctcgagtgatgaggaaatgtttccattttctggagaggaagatatgagtgatcca
gaggctttgaaatctttactttccttccagtggaagaacaaagcacttaatttcccagct
gaaaggaagttcaatgcagctgctgccctgagtgagccatactgtgctgtctgcaccctc
ttctacccctataaccagtcctcacaggtggagaaggaagctgcccccatctccacaggg
gagccgtcctcgttcgtgcacctttccaagtgtgggcagaagaccaagcccctgatccca
gagatgtgctttacctcaagtggagaaaacaccgagccccttccttcaaattcctacatc
ggagaggatggaaccagtcccttgatatcctgtgccaaatgctgcctgcaggttcatgct
agctgttacgggatacgcccggagctggtgaacgagagctggtcgtgctcgcggtgctca
gccggcgcctgggcagcggaatgttgcctgtgcaatctcaggggaggggctctccagatg
accactgatggccggtgggtccacgtaatctgtgctattgctgtccccgaggcgcgtttc
ctcaatgtcatagagcgtcatcccgtggatatcagcgccatccccgagcagaggtggaaa
ctgaggtgtgtgtactgcaggaagaggatgaagaaggtgtctggggcctgtgtccagtgc
tcctacgagcactgctccacgtccttccacgtgacgtgtgcgcacgcggccggcgtgccc
atggagcccgacgactggccctacgtcgtgtccatcacctgcttcaagcacaaagcagca
aaccagaacgtcccattccggagggaggtggccctggggcagacagtgatcaccaagaac
aggaacgggctctactatcgctgcagggtcattggcaccagcacccagaccttctacgaa
gtcaacttcgacgatggctcctacagtgacaacgtttaccccgagagcatcattagcagg
gactgcatccagatggggcctcctctggagggggagctggtgcagctgcagtggacggac
ggcatcatctacaaggccaagttcattgcagcccagatcagtcagatttaccaggtggag
tttgaagatggctctcagctaatggtaaagcgtggggatatttataccttggaggaagaa
cttcccaagagagtcaagtctcgcctgtccctcagcactggggctcctcaggaagatgca
tttttgggagatgaagtgagagcagccaagcgtccccggctggggaatccaagaaatcct
gaagaatatggacaaaccccagattacttggcctttatggagagcctgttgcagacacag
taccagcctgggactcagagcaacatgttttaa

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