Taeniopygia guttata (zebra finch): 100225601
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Entry
100225601 CDS
T01082
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100225601 (SOX13)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100225601 (SOX13)
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
CREPT
Motif
Other DBs
NCBI-GeneID:
100225601
NCBI-ProteinID:
XP_030147959
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All DBs
Position
26:2645897..2680130
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AA seq
610 aa
AA seq
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MSTRSPISPPPELDGEGTMVNCAKTEEKKEGGPETPPGATPSAEPRPHDPPGPPPRDGTE
PQALPQESRSPTGDVPEPRRSAFEPAGSGQEKLDFNRNLKEVMPTIEKLLASDWKERLLG
RNPAESKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKNMATMLFEKQQQQME
LARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFSPGHQPLPVTPESQLAL
PIQPIPCKPVDYPVQLLHSPPPPTLKRPAGPGHLQMQETSQPLNLTAKPKGPELPSASSS
PSLKLSGCQSLPPSHGASRELQSSPASLPLGFLGEGDAITKAIHDARQLLHGHGAAMEGS
LSSPYRKEPVGMDSSPVKERMEETPGHRLDEALLSCEMDGSRHFPESRNNNHIKRPMNAF
MVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLEKYPDY
KYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGFLMGPQGSQVPPSSSDVLYPRPVG
VQLPPPLLEHYLPRGADPAMPVIVNTRSLKDGDAGDDGHSVPEGDVYRYSEDEDSEGEDK
SDGELVVLTD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgaggagccccatctctccacccccggagctggatggagagggcaccatggtg
aactgcgccaagacggaggagaagaaggagggtggccccgagacccccccaggggccacc
cccagcgctgagccccggccccacgaccccccagggccaccacccagggatggcaccgag
ccccaggccctgccacaggaatcccgctctcccaccggggacgttcccgagccccgtcgc
tccgccttcgagccggccgggagcggccaggagaagctggacttcaacaggaacctgaag
gaagtgatgccgaccatcgagaagctgctggccagtgactggaaggagcggctgctaggt
cggaacccggctgaatccaaggaagtgaaaggaacccaggagagcctggcggagaaggag
ctgcagctgctggtgatgatcaaccagctgtccacgctgcgggaccagctgctgacggcg
cactcggagcagaagaacatggccaccatgctcttcgagaagcagcagcagcagatggag
ctggcgcggcagcagcaggagcagatcgccaagcagcagcagcagctcatccagcagcag
cacaagatcaacctcctgcagcagcagatccagcaggtcaacatgccctacgtgatgatc
cccgccttcagccccggccaccagcccctgccggtcacccccgagtcccagctggccctg
cccatccagcccatcccctgcaaaccggtggattacccggttcagctcctgcacagccca
cctccccccacgctgaagagacccgcgggcccgggccacctccagatgcaggagacctcg
cagccgctgaacctgacggccaaacccaaaggtccggagctgcccagtgcctccagttcg
cccagtttgaagctgagcgggtgccagtccctgccgccgagccacggggccagcagggag
ctgcagagcagcccggccagcctccctctgggattcctgggagagggcgatgccatcacc
aaagccatccacgacgcgcggcagctgctgcacggccacggcgccgccatggagggctca
ctgagcagcccctaccgcaaggagcccgtcgggatggactcctccccggtgaaggagcgg
atggaggagacgcccggccaccggctggacgaggctctgctgagctgcgagatggacggc
tcccggcacttcccggagtccaggaacaacaaccacatcaagcggcccatgaacgccttc
atggtgtgggccaaggacgagcgcaggaagatcctgcaggccttccccgacatgcacaac
tccagcatcagcaagatcctgggatcccgctggaaatccatgtccaaccaggagaagcag
ccgtactacgaggagcaggcgcggctgagccggcagcacctggagaagtacccggactac
aaatacaaaccgcggcccaagcgcacgtgcatcgtggagggcaagcggctgcgcgtgggc
gagtacaaggcgctgatgaggaaccggcgccaggacgccaggcagggcttcctcatgggg
ccgcagggcagccaggtgccccccagctcctcggacgtgctgtacccgcggccggtgggc
gtgcagctgcccccgcccctcctggagcattacctgccccgcggcgccgaccccgccatg
cccgtcatcgtcaacacccgcagcctcaaggacggggacgccggggacgacgggcactcg
gtgcccgagggggacgtgtaccgctacagcgaggacgaggactcggagggcgaggacaag
agtgacggcgagctggtggtgctgacggactga
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