Taeniopygia guttata (zebra finch): 100225632
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Entry
100225632 CDS
T01082
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100225632 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100225632 (HBS1L)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100225632 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
100225632
NCBI-ProteinID:
XP_030123830
Ensembl:
ENSTGUG00000011507
UniProt:
H0ZMP5
LinkDB
All DBs
Position
3:complement(54867857..54926796)
Genome browser
AA seq
687 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPATFAEPLEEEYG
CEGTDAAADCFTPTHQLTEVDRARLNSCLDQMREVLAESIPEQAMVQAVLDTKFDVQKAL
DLVLSQGSKQNEKTKNKDAVILAKTTKGKTRDSQSARMESEIVPKITKMTVSGKKQSMGF
EVPCVIAEENGHINTPQKGLLPEDISVTSGVLEAVSKSTPSPQVAQVSEEQNMVPTPAKK
SSKAKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETPTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLIQWYKGKCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKG
FPVLLHYQTVSEPATITRLLSVLHKSTGEVTKKKPKFLAKGQNALIELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgaggatataactacgacgaagactttgaagatgatgat
gtgtatggccaatcagtagaagatgattattgcatttctccttcaacagcagctcaattt
atttactccagacgagacaaaccagccacatttgctgagccattagaagaagaatatggc
tgtgaaggtactgatgctgctgctgattgttttacacccactcatcagttgactgaagtt
gatagagcccgtcttaattcatgccttgatcaaatgagagaagttttggcagagtccata
ccagaacaagcaatggtgcaagcagtactggatactaaatttgatgtacagaaggctttg
gatcttgtgctttcgcaaggcagtaagcaaaatgagaagaccaagaataaggatgctgtg
attttagcaaagactacaaaaggaaaaacaagggactcccagtcagccagaatggaatct
gaaattgtgccaaaaattaccaaaatgacagtgtctggaaagaaacagtctatgggattt
gaagttccatgtgtaattgctgaggaaaatggccacattaatacacctcagaaaggactg
ttacctgaagacatcagtgttacttctggggtacttgaggctgtctcaaaatctactcct
tcacctcaagtagcgcaggtttcagaagagcagaatatggtacccactccagcaaaaaag
tcaagcaaggcaaaaccacaaatagatgtgaaagcagagttggagaagagacaaggagga
aagcaactgctgaatttggtggtaataggacatgttgatgcaggcaaaagtactttaatg
ggtcatttgctctaccttttgggaaatgtgaacaaaagaactatgcacaaatatgaacag
gaatctaaaaaggctggtaaagcttcatttgcctatgcatgggtcttggatgaaactggt
gaagaaagagaaaggggagtaacaatggatgtgggtatgaccaaatttgagacaccaact
aaagtcattacactgatggatgctccaggccacaaggacttcattccaaatatgatcacc
ggagctgcacaggctgatgtggcaattttggttgtggatgccagcagaggagagtttgag
gcagggtttgagacgggcggacaaactcgagaacatggattattagtgcgctctcttgga
gtgacgcagttggctgttgcagtcaacaaaatggaccaggtcaattggcaacaggaaaga
tttcaggaaattacaagtaaacttggccaattccttaagcaagctggctttaaggaatca
gatgttgcttatatcccaacaagtggccttggtggtgaaaatctagtcacaaggggtcag
tcaagtgacctcatacaatggtataaagggaagtgtttgttggagcaaattgattctttc
aagccaccacagagatcagtggataaaccatttagactgtgtgttgctgatgtttttaaa
gaccaaggttcaggattttgtgtgactggtaaaatagaagcaggctatattcaggttgga
gaacgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacattgcac
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgtgggctgtgtattttgtgatcccaaggaacctataaaagtt
tgtactcggttcagagctcgggttctcatcttcaatattgaggttccaatcactaaagga
tttcctgtgcttttacactatcaaacagtaagtgaacctgctactattacaagactgttg
agtgttctgcacaaaagtactggtgaagtgacaaagaaaaaacctaagttcttggctaaa
ggccagaatgctctaatagaactacaaactcaaagacctgttgctctagagttgtacaaa
gattttaaagagctggggaggtttatgttacgctacagtggttccactattgctgcagga
gttgttacagagattaaagaatga
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