Taeniopygia guttata (zebra finch): 100225773
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Entry
100225773 CDS
T01082
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100225773 (SOX6)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100225773 (SOX6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
100225773
NCBI-ProteinID:
XP_030131287
Ensembl:
ENSTGUG00000008522
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All DBs
Position
5:complement(12605470..12868131)
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AA seq
850 aa
AA seq
DB search
MPSNSEVLAGVVGQSRTEEWKISYYIRMSSKQATSPFACAADGEETMTQDLASRDKEEGN
SDQHAASHLPLHNVMHNKPHSEELPTLVTTIQQDPEWDGVISAQHRMESESNKLCSLYSF
RNTSTSPNKPDEGGRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMEKLNTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGNTENKAAPSPYSGSHKSQTSFFPHSSQSLD
LEGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPSTPQPPNTTGAL
SPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPKTAEPVKSPTSPTQNLFPASKSSPVTVT
NKSGIPSPLSGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQQQ
PHGVDGKLPSMNNMGLNNCRNEKERTRFENLGPQLTGKPNEDGKIGPGVIDLTRPEDAEG
SKAVNGSAAKLQQYYCWPTGGATVAEARVYRDSRGRASSEPHIKRPMNAFMVWAKDERRK
ILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTC
IVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTTPSPQM
TSDCSSTSASPEPSIPVIQSTYGMKTDSGSLPGNEMMNGEDEIEMYEDYEDDPKSDYSSE
NEAHEAVSAN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaactctgaagtgctggctggtgtggtaggacaaagcaggacagaagagtgg
aagatcagctattatataagaatgtcttccaagcaggctacctctccatttgcatgtgca
gctgatggagaggaaacaatgacccaggacttagcatcccgagacaaggaggagggcaac
agtgatcagcacgcggcctctcatctgcctctacacaatgtcatgcacaacaaacctcac
tctgaggagctaccgaccttggtcaccaccatccagcaggaccccgagtgggatggagta
atctcagcccaacacagaatggagtcagagagtaataagttatgttccctatattccttc
cgaaatacgtctacctcaccaaacaagccggacgaaggaggtcgtgaccgcagtgagcta
atgaccagtgttaactttggaacgccggagcgccgcaagggaagcctagcagatgtggtg
gacacactgaagcagaagaaactagaagaaatgaccaggactgagcaagaagattcatcc
tgtatggaaaagctactttctaaagactggaaggagaagatggaaaaattaaacacaagt
gatctccttggagaaattaaaggtacaccagaaagcctggcagaaaaagagcgacagctc
tctacaatgatcacccagctgatcagcttacgggagcagctcctggctgcccatgatgag
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagagcagattgcaagacaacagcagcaacttctgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacactggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacatacaagccaggaaatactgaaaataaggcagcaccttccccc
tactctgggtctcacaaaagccagacatccttctttcctcacagctcacaaagccttgat
ctggaaggtgataactaccctgtgcagttcattccatcaacaatggcagctgctgctgct
tctggactcagccctttacagctccagcaactgtatgcagctcagctggcaagcatgcaa
gtttctcctggagccaaaatgccatctactccacagccaccaaatacaacaggggcactt
tcacccactgggatgaaaaatgagaagagagggaccagcccggtaactcaagttaaggat
gaagcagctcagccactgaatctctcagcccgacccaaaacagctgaacctgtcaaatcc
ccaacatctccaacgcagaatctcttcccagccagcaaaagcagcccagtgacagtgacg
aacaagagtggcatccccagcccgctcagtggatctctgggaagagggtcctctctagat
atcctttccagtcttaattcacctgccctatttggggaccaggacacagtaatgaaagcc
attcaggaggctcgaaaaatgagagagcaaatccaaagggaacagcagcagcaacagcag
cctcatggtgttgatggaaaattgccctccatgaataacatgggtctaaacaactgcagg
aatgaaaaggaaagaacaaggtttgaaaatttaggcccacagttaacagggaaacccaat
gaagatggaaaaattggccccggcgtcatcgatcttacaaggccagaagatgcagaaggg
agtaaagcagtgaatggctctgcagctaaactacagcagtattattgttggccaacagga
ggggccacggtggctgaagcccgggtctaccgggactcgcggggccgcgccagcagcgag
ccccacatcaagcggccgatgaacgccttcatggtctgggccaaggacgagcgccggaaa
atcctccaggccttccccgacatgcacaactccaacatcagcaaaatcctaggatctcgc
tggaagtccatgtcaaatcaggagaaacaaccttattatgaagagcaggcacgactaagt
aaaatccacctagaaaagtaccctaattacaaatacaagcctcgaccaaaacgtacctgc
attgtggatgggaagaagctgcggattggtgaatacaagcagctgatgaggtctcgaaga
caggagatgaggcagttttttaccgtaggacaacagcctcagattccaatcaccacggga
acaggagttgtctaccctggtgctattaccatggccaccaccacgccgtcccctcagatg
acatcagattgctccagcacctctgccagccctgagcccagcatccctgtcatccagagc
acttatggtatgaagacggacagcggaagccttcctgggaacgaaatgatgaacggagag
gatgaaatagaaatgtacgaggactatgaggatgatcccaaatcagactatagtagtgaa
aatgaagcccatgaggcagtcagtgccaactga
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