Taeniopygia guttata (zebra finch): 100225794
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Entry
100225794 CDS
T01082
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100225794 (RC3H1)
04121 Ubiquitin system [BR:
tgu04121
]
100225794 (RC3H1)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100225794 (RC3H1)
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100225794 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
100225794
NCBI-ProteinID:
XP_030135260
Ensembl:
ENSTGUG00000004090
LinkDB
All DBs
Position
8:23308421..23368458
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPIALCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSSYESALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPSVSVTKQLQMVPRGSQLYSAQQADMFYPDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAPEAGTPYLEHYGPYLSERVVSPQYAQPQGY
PTLAQPMYPPHYDSRRVYPPVQPYQREDVVRGSPVPIDISQAAVPLYVPESRDRYQQTEA
YCPVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKTMREQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
AATKSIISDYSPYETHGGWGGSPYSPHQNIPSQGRFSDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDMKTKLGTTKQTENGQLEQQNKVPAEDLTLTFS
SDVPNGSALTQENIGLLSNNMASLSLSEDPEGGGDGHDSQRAGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacgatccggaagccaatcagcttgggctgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacagac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccaattgctttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgcgtggaagaattggcattgtacctcaaaccactcagcagtgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattctccagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcaatgcaa
gaggaggctttaaagctggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccacgattccctcaggcttccaagact
agtattgggcatgttgtccagctcctttacagagcctcgtgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcagctgaaggaggagtttcggacttacgaagctctgagg
agggagcacgattcccagatagttcagatcgccatggaagcgggtttgcgcattgcacct
gaccagtggtcctcactgttgtatggagaccagtctcacaaatcccacatgcagagtatc
attgacaagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagacccagctaacttgaatcgtcttagacctcacctagagctccta
gcaaatattgatcccagtccagatgctccacctccaacatgggaacagctggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacctacatgtgccga
gacatgaagcagagaggagggtgtccccgaggggccagctgcacctttgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtctcgttcccagaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacctctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaactgatttctcgagggactgactccagttatgaaagtgccctg
aagccggggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgttcccaagagctctatttctgccttgccagtgaaccctcatcctgtgcctgct
cgggtgccagcagatctgccctcagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacagtgcacaacaagcagatatgttttatccagaccccagaggggct
gccccatcatttgagccagcgccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccgtcagctcccgaggcgggtacgccgtacctggagcac
tacgggccgtacctctcggagcgtgtggtgagcccgcagtacgcgcagccgcaggggtac
ccgaccctggcacagcccatgtacccgccgcactacgacagccgccgcgtgtaccccccc
gtgcagccctaccagcgggaggacgtggtgcggggcagcccggtgcccatcgacatctca
caggcggctgtgcccctctacgtacccgagtccagagacagataccagcaaacagaggct
tactgcccggtggctccacatctcggtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagatcatggctcagctggaagagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaatgtg
gatagcaaaaccatgcgtgagcagcgactggacatgcagcgccgagcggccgagacgggg
gacgatgacctcattccatttggagaccgaccaactgtgtcgagattcggggccatttct
cgtacttccaaagccatgtaccagaactctgggcccatgcaggccatggcggttcaggga
gctgccaccaaatccatcatttcagactacagtccttatgaaacccacggtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggacgtttcagtgacagggag
aggctgtccatgtcagatgtggctggtcatgggaagcagttgccctcagctgaacgagag
cagcagctgcgcatggaactgcagcaagttgaccatcagatcagccagcagacccaaatg
cggggactggaggctgttagtaacaggctgctgttgcagagagaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatatgaaaaccaagctgggcaccactaaacagacagaa
aatggacaattagaacaacaaaacaaggttccagctgaggaccttacactgacattcagc
agtgatgttccgaatggatcagctttgacccaagagaacattggcctcctgtcaaacaat
atggcatctctcagcctgtcagaggaccccgagggaggaggagatggccatgactcccag
cgagcgggagtgacacccacatctgctccatga
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