Taeniopygia guttata (zebra finch): 100226065
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Entry
100226065 CDS
T01082
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100226065 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100226065 (ARID1B)
03021 Transcription machinery [BR:
tgu03021
]
100226065 (ARID1B)
03036 Chromosome and associated proteins [BR:
tgu03036
]
100226065 (ARID1B)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
Helix-turn-helix
ARID
100226065 (ARID1B)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100226065 (ARID1B)
Chromosome and associated proteins [BR:
tgu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100226065 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
100226065
NCBI-ProteinID:
XP_030123922
UniProt:
H0ZLJ0
LinkDB
All DBs
Position
3:58639867..58963297
Genome browser
AA seq
2373 aa
AA seq
DB search
MIMAAQVAAAPASANNSKGKAPSLPSGLGPERGPGGAGAPGPGPALGVGEGSLAGSNSVN
NLDHHLHHHHRSEPPNMANNAAPAAAAGNNNNNASGGGGGSSSEPALKEGGSSSELSSSS
SSSSSSSSSNPGSAMETGLLPNHKLKSVGGDHPAAPPHHHHAHHPHHHAHHHHAHHPHHH
HHALQQQLNQFPPPPPQQPPPQHHPVQNNNSSLGGGGGGSGSNNNGGGGGGAAQPSADME
QQQHGGKDSVLGAQAEPTQQPQQMLNKGADEEEMPGKMGEPIGGRYDHPGLGPLGGQQQP
QQPPPSAGSGGGGLGGGGGSGGGGGGPSAVGVSEFNSYYGNPAPAPASSATASRAGPCFD
QHGGQQSPGMGIMHPTAAPNSMDPLQNSHEGYPNSQYNHYPGYGRGPSGGGAGGGGGAGA
VAAAAAAAGAGGGGYGGSAAGYGVLSSPRQPGGGMMMGPGGGAGLGKAGAGAAAAAGGFA
RFSGQNQHPSGATPTLNQLLTSPSPMMRSYGSSYPDYSSPSAPPQPQPQAAAAAPGSQQA
AAGMGMGKDMGAQYGAANPAWAAAQQRNHPAMSPGNTGQAISRTQGSPMDPMVMKRPQLY
GMGNNPHSQAQQSSPYPGQSYGPPGPQRYPVGMQGRAPAAMGGMQYPQQQIPPQYGQQGV
SGYCQQGQQPYYNQQPQPQHLPPQAQYLSQAQQRYQAQQDMSQEGYGTRSQPPMAPGKPN
HEDLNLIQQERPSSLPVEVLASEDATFGHKDLSGSIDDLPTGTEATLSSAVSASGSTSSQ
GEQSNPAQSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPP
GSQSESSSHPALSQSPMPQDRGFMAGIQRNPQMSQYGPQQTGPSMSPHPSPGGQVHPGIS
SFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPNTSYSGPGPGMGINANSQMHGQGPSQ
PCGSMPLGRMPSAGMQSRPFPGNMSSMTPNSPGMSQQGGPGMGPPMPTVNRKAQEAAAAV
MQAAANSAQSRQGNFPAMNQSGIMGSSSPYTQPMNNSSGLMNPQAPPYSMAPNMVNSSAG
NAPMGLADMMTPGESKLPLPLKADGKEEGAPQPESKSKDSYSSQGISQPPTPSNLPVPSP
MSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLWVD
RYLTFMEERGTPVASLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATTLNVGTS
SSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKIQPPSPANSGSLQGPQT
PQSTGSNSMTEVPGDLKPPTPASTPHGQMTPMQGGRNSAVSVHDPFSDVSDSAFPKRNSM
TPNAPYQQGINMPDMMGRMPYEPNKDPFGGMRKVPGSNEPFMTPGQMPNSGIQDMYNQSP
SGAMSNMSMSQRQQFSYGSGYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGMYPQQQNYKR
HMDGMYGPPAKRHEGDMYNMQYGNQQQEMYNQYSNAYTGPDRRPMQGQYPYPYNRERMQG
PGQMQQHGIPPQMIGGPMQSSSSSEGPQQNMWPTRNDMPYPYQNRQGPGGPTQAPPYPGM
NRTDDMMVPDQRINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNHISR
APSPASFQRSLENRMSPSKSPFLPSMKMQKVIPTVPVSQVTGPPPQPPPIRREITFPPGS
VEASQPVLKPRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFN
LSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPGHKALDHKAAKKDDSQSLAEDTGKDE
NDECIDYFDEDEEEGEDEKVEGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIVKKNN
LFVVDRSDKLGRVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNSPSKK
KDLEGKGESEEQQEKSITATIDDVLSARPGALPEDSNSGSQTESSKFPFGIHQAKSHRNI
KLLEDEPRSRDETPLCTITHWQDSLAKRCICVSNIVRSLSFVPGNDTEMSKHPGLVLILG
KLILLHHEHPERKRAPQTYEKEEEEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLD
LSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNV
DLILATPPFSRQEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSI
GNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFL
LHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtcgcagcggctccggcgagtgcgaacaacagcaagggcaaa
gccccgagcctgccgagcggcctgggcccagagcgaggcccggggggggccggggctccc
gggccgggccccgcactgggggtcggcgaggggagtctggccggcagcaacagcgtgaat
aatttagatcaccatctccaccaccaccaccgcagcgagccgccgaacatggccaataac
gcggctcccgccgctgccgccggtaacaacaacaacaacgccagcggcggcggtggcggc
tcctcctcggagccggctctgaaggaaggtggaagctcctcggagttatcttcttcgtct
tcttcctcctcctcctcctcctcctccaacccgggctcggctatggagacggggctgctc
cccaaccacaagctgaagagcgtcggaggcgatcaccccgccgcgccgccccaccaccac
catgcccaccacccgcatcaccatgcccaccaccaccatgcccaccacccgcaccaccac
caccatgcactacagcagcagctaaatcaattcccgccgccgccgccgcagcagccgccg
cctcagcaccatcccgtgcagaataacaacagcagcctcggcggcggcggcggcggcagc
ggcagcaacaacaacggcggtggcggtggcggcgctgctcagcccagtgcagacatggag
cagcagcaacatggaggaaaagacagtgttttgggcgctcaggccgagcccacccagcag
ccgcagcaaatgctgaataaaggcgccgacgaggaggagatgcccggcaagatgggcgag
cccatcggcggccgctacgaccaccccggcttgggacccctgggcggacagcagcagccc
cagcagccgcccccgagcgctgggagcggcggcggcggcctcggcggcggcggcgggagc
gggggaggcggcggcggcccctccgcggtgggtgtctcggagttcaatagctattatggc
aaccctgcccctgcccctgccagcagcgctacggcgagccgcgccgggccttgctttgat
caacatggcggacaacaaagccccgggatggggataatgcaccccacggcggcccccaac
agcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaaccactac
ccgggctacggccgcggccccagcggcggcggcgcgggcggcggcggcggcgcgggagcc
gtggcggcggcggcggcggccgctggggcaggcggcggcggctacgggggctccgcggca
ggctacggggtgctgagctccccgaggcagcccggcggcggcatgatgatgggccccggc
ggtggagccggcctcggcaaggctggtgccggcgcggcggcggcggccggcggctttgcg
cggttctccgggcagaaccagcacccgtccggggccacccctaccttgaaccagctgctc
acgtcccccagccccatgatgcggagctacggcagcagctaccccgactacagcagcccc
agcgccccgccgcaaccccagccccaggcagcggcggccgccccgggaagccagcaggca
gcggcgggcatgggcatgggcaaggacatgggcgcccagtacggagcggcgaacccggcc
tgggcagcggctcaacaaaggaaccacccggcgatgagccccgggaacaccgggcaggcc
atcagcaggacccagggcagtccgatggatccgatggtgatgaagaggccgcagctgtac
ggcatgggcaataaccctcactctcaggcacagcagagcagcccctaccccgggcagtcc
tacggccctcccggcccccagcgctatcccgtgggaatgcagggccgagccccggcagcc
atgggaggaatgcagtatccacagcaacagatcccacctcagtatggtcagcaaggtgta
agtggctactgccagcagggccagcagccgtactacaaccagcagccgcagccgcagcac
ctgccgccccaggcacagtacctgtcgcaggcccagcagaggtaccaggctcagcaggac
atgtctcaggaaggctatggaaccagatctcaaccccctatggccccaggaaagcctaac
catgaagacttgaatctaatccagcaagaaagaccatcgagcttaccagttgaagtcttg
gcctccgaggatgctacatttggacacaaggatttatctggatccattgacgacttgccg
actggaactgaagcaaccctcagctcagctgttagcgcgtcaggctctacgagcagccaa
ggggagcagagcaaccccgcacagtctccgttttcccctcatgcttctccacatctctct
ggcatccctgggggcccatcaccttcccctgtaggctcacctgttggaagcaaccagtca
agatctggtcccatttctccagcgagtattccaggcagtcagatgccaccgcagcctcct
ggcagccagtcagaatccagctcccaccctgccttgagccagtcaccaatgccacaggat
cgaggttttatggcaggcatacagaggaaccctcaaatgtcacagtatggacctcaacaa
actggaccttccatgtcaccacacccctcgcctggaggtcaagtgcatcctggaatcagt
agctttcagcagagtaattcaagtggtacttatgggcctcagatgagccagtatggacca
caaggaaactactccagaccaccaacgtacagtggtgtgcccaacacaagttacagtggc
ccaggacccggcatgggtataaatgccaacagtcagatgcatggacaggggccaagccag
ccttgtggttccatgcccctgggacggatgccatcagctgggatgcagagcagaccattt
cctggaaacatgagcagtatgacccccaattctcctggcatgtctcaacagggaggccct
gggatgggcccacccatgccaactgtgaaccgtaaggcacaggaggcggctgctgcagtg
atgcaggctgctgcgaactccgctcagagcaggcaaggcaattttcctgccatgaatcag
agcggcattatgggatccagctccccctacactcagccgatgaacaacagctctggcctg
atgaacccgcaggctcctccttacagcatggcacccaacatggtgaacagctcagcaggt
aatgcacctatgggtcttgcagatatgatgacacctggtgagtccaaacttccccttcct
ctcaaagcagatggcaaagaagaaggagccccccaacccgagagcaagtcaaaggatagc
tacagctctcagggtatttctcagcccccaaccccaagcaacctgccagtcccttcccca
atgtccccaagctctgctagcatctcctcatttcatggagatgaaagtgatagcattagc
agcccaggctggccaaagactccatcaagccctaaatcaagttcctctaccacaactgga
gagaagatcactaaagtctatgagctaggaaatgagccagagcgcaagctgtgggtggat
cggtacctgacgttcatggaagagaggggcacgcctgtggccagtctgccagctgtgggc
aagaagcccttggacctgttcaggctctatgtctgcgtcaaggagattggaggtttagca
caggttaataaaaataagaagtggcgtgagctggcaaccaccttgaacgttggcacttcg
agcagcgcagccagctccctgaaaaaacaatacattcagtacctgtttgccttcgagtgc
aagattgagcgaggggaggagccccctccagaagtcttcagcactggagataccaagaaa
cagcctaagattcagccgccatctcctgctaattctggttccttgcaaggcccacagact
ccacagtccactggtagtaattccatgacagaagtgccaggcgatttgaagcccccaaca
ccagcatccacacctcatggacagatgacacctatgcagggtggcagaaacagcgcagtc
agtgtgcatgatcccttttctgatgtaagtgattcagcgttcccaaagcgaaactccatg
acgccaaatgcaccataccagcagggaataaacatgccagatatgatgggaaggatgcca
tacgagccgaataaagatccttttggtggaatgagaaaagtgcctggaagcaatgagcct
ttcatgacccctggacaaatgcctaacagtggaatacaagatatgtataaccagagtcca
tctggagcaatgtccaacatgagcatgagccagcgacagcagttctcttatggaagtggc
tatgacaggaggcatgaaccctacgggcagcagtatccaggacaaggacctccctcagga
cagccaccatatggaggacatcaacctggaatgtatccacagcagcagaactacaagaga
cacatggatggcatgtatgggcctccagccaaacgccacgaaggggatatgtataacatg
cagtatggcaaccagcagcaggaaatgtataaccagtacagcaacgcttacacagggcct
gacaggaggcccatgcagggacagtacccatacccatataacagggagaggatgcagggc
ccaggacaaatgcagcagcatggaatacctccccagatgattggtggccccatgcagtcg
tcatcctccagtgaaggtcctcagcagaacatgtggccaacacgaaatgatatgccttac
ccttaccagaacaggcaaggtccaggaggccctacacaggccccaccgtatccagggatg
aatcgcactgatgatatgatggtacctgaccagaggataaaccacgagagtcagtggcct
tctcatgtcaaccaacggcagccttcttatatgtcatcctcagcctccatgcagcctatc
actagacctcctcagtcatcctaccagacaccaccctctatgccaaaccacatctccaga
gctccaagtccagcgtccttccagcgctctttggaaaaccgtatgtctccaagcaagtct
cctttcttaccctccatgaagatgcaaaaggttatacccacagttccagtgtcacaggtc
acaggacctccaccccaaccaccaccgattaggcgagagattaccttccccccaggctcc
gtagaagcatcccaaccagtcttgaaaccaagacgaaagattacctcaaaagatattgta
actcctgaagcctggagagtgatgatgtctcttaaatctggtcttttggctgaaagtacc
tgggcgctagacactattaatattcttctttatgatgacagcactgttgctactttcaac
ctctctcagttgtctggatttcttgagcttttagtagaatattttagaaaatgcctgatt
gacatttttggaatccttatggaatatgaagtgggagatccaggccacaaagcacttgat
cacaaagcagccaagaaagatgatagtcagtccttggcagaggatactggaaaagatgag
aatgacgaatgtattgactattttgatgaagatgaggaggagggggaggatgaaaaggta
gaaggagaagaaaagagcattgttttttctactcctggtgccattgctgatccaagtgag
aggccaaaacaagcaagtaaatttgacaagctgccaataaagattgtaaagaaaaataat
ctatttgttgttgaccgatctgacaaacttggacgcgttcaggaatttgatagtggactt
ctccactggcagcttggtggtggtgacacaactgagcatatccagactcactttgaaagc
aagatggagattccaccacgcaggaaagcccctcctcccttgaactctccaagcaaaaag
aaggacctcgaggggaaaggtgaatctgaggagcaacaagaaaagagtataacagcaacc
attgatgatgtcctctcagctcggccaggagcactacctgaagactcaaactctggttcc
caaacagagagcagtaaatttccctttgggatccatcaagccaaaagccaccggaatatt
aaattgctagaggatgagccaaggagccgggatgagactcctctatgcaccataactcac
tggcaagactccttggccaaacgctgcatctgtgtgtcaaatattgtccgtagcttgtct
tttgtgcctggcaatgacaccgaaatgtccaaacatccaggcttggtgctgatcctggga
aagttgatccttcttcatcatgagcatccagaaagaaagcgagcaccgcagacttatgag
aaagaggaagaggaggacaaaggggtggcctgcagcaaggatgagtggtggtgggactgc
ctcgaggtcttgagggataatacattggtcacattagccaacatttctgggcagctagac
ttgtctgcttacacagaaagcatctgtttgccaattttggatggcttgctgcactggatg
gtgtgcccgtctgcagaggcacaggatccttttccaaccgtggggcccaactcagttctt
tcgcctcagagacttgtgctggagaccctgtgtaagctcagtatccaggacaataatgtg
gaccttatcttggccacccccccattcagccgtcaggagaaactctacgctactttagtt
aggtacgttggggaccgcaaaaacccggtctgccgagaaatgtccatggcgctcctatcg
aaccttgcccagggggacacattagcagcaagggcaatagctgtgcagaagggaagcatt
ggaaacttgataagcttcctggaggatggggtcactatggcccagtaccagcagagccag
cataacctcatgcacatgcagcctccgcctctggagccgcctagcgtagacatgatgtgc
agggcagccaaggccttgctggccatggcgagagtggacgagaaccgctctgagttcctt
ttgcacgagggccgtttgctggatatctcaatatctgctgtcctgaactctctggttgca
tctgtcatctgtgatgtactttttcagattgggcagttatga
DBGET
integrated database retrieval system
