Taeniopygia guttata (zebra finch): 100226404
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Entry
100226404 CDS
T01082
Symbol
HERC4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100226404 (HERC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tgu04121
]
100226404 (HERC4)
Enzymes [BR:
tgu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
100226404 (HERC4)
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
HECT type E3
100226404 (HERC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
100226404
NCBI-ProteinID:
XP_030131433
Ensembl:
ENSTGUG00000003489
UniProt:
H0YZB9
LinkDB
All DBs
Position
6:complement(1238875..1269132)
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AA seq
1056 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFLNKRVRDVGCGLRHTVFVLDDGTVYTCGC
NDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDGQLGLPG
TEECVRVPRNIRSLSEIQIVQVACGYYHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQTS
PQMIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDDNDRYVPTLLKSLR
SQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSVVTQIT
CGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKGSWIPFSPQCPMSTDSEE
CYCVKRIFSGGDQSFAHYFYPQNMVPPDDFRYPDLLKQIWTVNEMFIQRLLSFPSGRLPV
EIANEIDGTFSSAGCLNGSFLALSNDDHYKTSARFSGVDMNAARLLFHKLIQPEHTHISQ
QVAASLEKNLIPKLTSSLPDVEALRLYLTLPECPLMSDENNFTTLAIPFGAAILNLEKAP
LKVLENWWSALEPPLFLKIVELYKDVVVHLLKLCKMGLPPSDRRILTNFLHTAFRVLEIL
HRVNERGQVIQYDRFYIHEIQDLIDIRNDYANWFQQQVLGMDVNHGLTELTDIPVIICTY
PFVFDAQAKTTLLQTDAIIQMQMAVDQAHRQNLSSLFLPVFESVNPCLILMVRRDNIVGD
AVEVLRKTKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEESRL
IWFSDKTFEDSDLFHLIGVVCGLAIYNFTIVDLPFPLALYKKLLNKKPSLDDLKELIPDV
GRGMQQLLDYPEDDIEEAFCLNFTITVENFGTTEIKELVPKGADIPVVKQNRQDFVDAYV
DYIFNRSVASLYSAFHEGFHKVCGGKVLQLFQPSELQAMVIGNTNYDWKELEKNTEYKGE
YWADHPTIKIFWEVFHELSLEKKKQFLLFLTGSDRIPILGMKCLKLVIQPTGGGEDYLPV
AHTCFNLLDLPKYTDKETLKSKLIQAIDHYEGFSLV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctggggcaacgcatcttttggacagcttggattgggtggaattgatgaagag
attgttttagaacccagaaaaagtgactttttcctaaataaaagggtcagagatgtagga
tgtggactgagacatactgtttttgtcctggatgatgggacagtttatacatgtggatgc
aatgatctgggacaactagggcatgaaaaagccaggaaaagacccgagcatgttggtgca
ctggatgcccaaaatattgtagctgtgtcatgtggagaagcccacactcttgcattaaat
gacaaaggtcaggtgtatgcttggggtctggctactgatggacagcttggcttgccagga
acagaggaatgcgtcagagtgcccagaaatattagaagtttatcagagatccagattgtt
caagttgcttgtggttattatcactcactagcactctcaaaaggaagtgaagtattttcc
tggggacaaaacaaatatggccagctgggcttaggttatgagtataaaaaacaaacctca
ccacaaatgattaaatctctgctgggaatcccttttgcacagattgcagcaggaggagct
catagttttgtactgactctttctggagccatcttcggatggggacgcaacaaatttggg
cagctgggtcttaatgatgacaatgacaggtatgttcctacactgctgaagtccctgaga
agtcagaaagttgttcatatatgttgtggagaagatcatactgctgcccttacaaaggaa
ggtggggtttttacctttggagctggaggctatggtcagctgggtcataactctaccagc
cacgagataaatccaaggaaagtttttgagcttatgggaagcgttgtcacgcaaatcacc
tgtggcaggcagcacaccactgcattcgtcccttcttctggaagaatttactcttttgga
ttgggaggcaatgggcagttgggtacagggaccaccagtaacaggaaaagtcccttcaca
gtgaaaggaagctggattccctttagtcctcagtgcccaatgagcacagacagtgaggag
tgctactgtgtaaagagaatcttctctggtggggaccaaagttttgcacactacttctac
ccacagaacatggtgccaccagatgattttagatatcctgaccttttgaagcagatctgg
actgtgaatgaaatgtttattcaaagattgctgagtttcccttctggaagacttcctgta
gagatagctaatgaaattgatggaacattctcctctgctgggtgcctgaatgggagcttt
ttggcattgagcaatgatgatcattacaaaaccagcgctagattctcaggggttgacatg
aatgctgctagactactctttcacaaactcatacagcctgagcatactcacatatcacaa
caggtggcagctagtttggaaaagaaccttattcccaaattgaccagctccttaccagat
gttgaagctttgaggctgtatctcactctaccagaatgcccactgatgagtgatgaaaac
aatttcacaacattagctattccttttggagcagctattctgaacctagaaaaagctcct
ctgaaagttcttgaaaattggtggtctgcacttgaacctcccttgttcctcaagatagtg
gaactctacaaggatgtcgtagtgcaccttctgaagctgtgcaagatgggccttccacct
tctgacagaagaatactcacaaatttcctacacacagccttcagagtcctggaaatactg
cacagagtaaatgaaagaggacaagttatacagtatgacagattttacattcatgagata
caagatttgatagatatcagaaatgactatgccaactggttccagcagcaggtattggga
atggatgtcaaccatggattaactgagttaacagatattcctgttataatttgcacatac
ccatttgtatttgatgcccaggcaaagacaactctcttgcaaacagatgcaatcatacag
atgcagatggctgtcgatcaggcccacaggcagaatttgtcttctctcttcctgccagtg
tttgaatctgtcaatccctgcctgatactgatggtccggagggacaacatcgtgggggac
gctgtggaggtgctcaggaaaacaaagaatgtggactacaagaagccgctcaaggttatt
tttgtaggggaggaagctgtcgatgccggaggcgttcgcaaagaattttttttgctcatc
atgagagagttgctagatcccaaatatggaatgttcaggtattacgaggagtccaggctg
atctggttctctgataagacctttgaagacagtgacttgtttcatttgattggtgttgtc
tgtgggctagcaatatataattttactattgtagaccttccctttcctctggctttgtac
aaaaagctattgaataagaaaccatccctggatgatttaaaagaattgattccagatgtt
ggcaggggaatgcaacaactactggactatccagaggatgacatagaagaggcattttgt
cttaattttactatcactgtggaaaattttggtacaacagaaattaaggagcttgttcct
aaaggtgctgacattcctgtagtcaaacaaaataggcaagattttgtagatgcatatgtg
gattacatcttcaatagatctgtggcttccttatacagtgcattccatgaaggcttccac
aaagtatgtggaggtaaagttcttcagctcttccagcccagtgagttgcaggcaatggtg
attgggaacacaaattatgactggaaagagctggagaagaatacagaatacaaaggagaa
tactgggcagaccatcctacaattaaaatattctgggaggtttttcacgagttgtctttg
gagaagaaaaaacagtttttgttgtttctgacaggcagtgatcggattccaattcttgga
atgaagtgtctgaaactggtcatccagccaacaggagggggagaagattacctgccagta
gctcacacttgctttaatcttcttgatcttccgaaatacacagataaagaaaccctgaaa
tctaagttgatccaggctatagaccactatgaaggtttcagtttagtataa
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