Taeniopygia guttata (zebra finch): 100226606
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Entry
100226606 CDS
T01082
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100226606 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100226606 (DHX38)
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100226606 (DHX38)
Spliceosome [BR:
tgu03041
]
Complex C
Other components
Step II factors
100226606 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
Microtub_bd
SRP54
AAA_16
AAA_30
AAA_7
DUF6449
Motif
Other DBs
NCBI-GeneID:
100226606
NCBI-ProteinID:
XP_030138236
Ensembl:
ENSTGUG00000008196
UniProt:
H0ZD38
LinkDB
All DBs
Position
11:complement(20828158..20837723)
Genome browser
AA seq
1230 aa
AA seq
DB search
MAAAGEESLHRLSGTSPSGEAGGLVLRPRGAEQHVFKTPAPRVSLLGLDVLAAQKRRERQ
EEAAGGKRSRVASYKDWEEGRDEAGSAEEEEEDEASRSSRGARRNRHYRSVHVETPSYTG
GVSEEFLERSRQRERERREHGVFASSKEEKDRKKERSRDRNHDRKRDREERDRSHHSRSE
KDGSSERSGRRGEPESPRHRPKDAATPSRSSWEEDDGGYSSAHRSQWESPSPTPSCRDSE
RSHRPSSLRDTDRRERDRSVRSRYSDKTPLPTPSYKYNEWADDRRHLGATPRLSRGRGRR
TEGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKKREQHLHK
QRQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVHLLVHNLVPPFL
DGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAGTKLGD
IMGIKKEEEKDEMLTEDGKVDYKTEQKFAEHMKEKSEASSEFAKKKSILEQRQYLPIFAV
QQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRV
SEEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDNYSAIIMDEAHER
SLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSK
TPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLP
IYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGM
DALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLL
LKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSK
MLIVSCDMGCSSEILLVVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQ
WKNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAY
FHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVD
GEWLAELGPMFYSIKHAGKSRQENRRRAKEEASAMEEEMALAEEQLRARREEQERRNPLG
SARSTKIYTPGRKEQGEAVTPRRTPARFGL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcgggcgaggagtcgctgcatcggctgtcggggacgagcccgagcggcgag
gcgggcgggctggtactgcggccgcggggcgccgagcagcacgtctttaagaccccggcg
ccgcgcgtctccctgctggggctggacgtgctggcggcgcagaagcggcgggagcgccag
gaggaggcggccggggggaagcggtcccgggtcgcgtcctacaaggactgggaagagggt
cgtgacgaggcgggcagcgccgaggaggaggaagaggacgaggccagccggagcagccgc
ggagctcgcaggaacagacattaccgctctgtccacgtggagacaccttcctataccggg
ggtgtaagcgaggagttcttggaacgcagccggcagcgggagagggagcgtcgggaacat
ggagtctttgcctcctccaaggaggagaaggaccggaagaaggaacgcagcagggatcgg
aaccacgatcgtaaacgagaccgtgaggagcgggacaggagtcatcacagcagatcagag
aaggatggctcatcagagcggagtggcaggaggggtgaacctgagagcccccgacatcgg
cccaaagatgcagccacaccatctcgctccagctgggaggaggatgatggtggctacagc
agtgcccaccgctcacagtgggagtctccatctcccacaccttcctgtcgagactcagag
cgtagccaccggccgtcatcgctgcgggacacggaccggcgggagcgggacaggtctgtg
aggagccggtactctgataagacaccgttgccgaccccatcatacaagtacaatgaatgg
gctgatgaccggaggcacctgggggccacgccacgcctgtcccgagggagagggcggcgc
acagaaggggaggagggcatcgccttcgagacagaagaggagcggcagcagtgggaggat
gaccagcggcaagctgaccgggactggtacatgatggatgagggctacgatgagtttcac
aaccctttggcttactcctctgaggagtatgtgaagaagcgtgagcagcacttgcacaag
cagaggcagaagcggatctcggcacagcggcggcagatcaatgaggataatgagcgctgg
gagacaaatcgcatgctgaccagtggtgtggtccatcggattgaggtggacgaagatttt
gaggaggataactctgctaaggtgcatttgttggtgcacaatctagtgccccctttccta
gatggaaggattgtcttcaccaagcagccagagccagtcatccctgtgaaggatgccacc
tcggatttggccatcatagctcggaaaggcagccagctggtgcgcaagcacagagagcaa
aaggagcgtaagagggctcagcacaagcactgggagttggcaggcacgaaactgggagac
attatggggatcaagaaagaggaggagaaggacgagatgctgacagaagatggcaaagtg
gattacaaaacagagcagaagtttgctgagcacatgaaagaaaaaagtgaagccagcagt
gagtttgccaagaaaaaatcgatcctggagcagagacaatacctacccatctttgctgta
cagcaggaactgctctccatcctcagagacaacagcattgtcatcgtggtgggggagaca
gggagtgggaagacaacgcagctgacacagtatctccatgaggatggctacactgattac
ggcatgatcggctgcacacagccccgcagagtggctgccatgtcggtggccaagcgggtc
agtgaggagatgggggtgcgtctgggtgaggaggtaggctatgccatccgttttgaggac
tgcacgtctgagaacacagtgatcaagtacatgacagatgggatcctgctccgtgagtca
ctgcgggaggctgacctggacaactacagtgctatcatcatggacgaggcacatgagcgc
tcgctcaacactgatgtgctgttcgggctgcttcgggaggtggtcgcgcgacgctcggat
ctgaagcttgttgttacttcagccaccatggacgcagataagtttgcctccttctttggg
aacgttcccattttccacattcctgggcgcacttttcctgtggatattcttttcagcaag
accccacaggaggattatgtggaggctgcagttaaacaagccttgcaggtccacttgtct
ggtgctcctggagacatcctcgtcttcatgcctggccaggaggatattgaggtgacctca
gagcagattgtggagcaccttgaggagctggagaaggcacctgctcttgctgtactgcca
atctactctcagctgccctcggacttgcaggccaagatcttccagaaggctcctgatggg
gtcaggaagtgcattgttgccactaacattgcagagacctcactgacagtggatggtatc
atgtttgtaattgactctggctactgcaaattgaaggttttcaacccccgtataggcatg
gatgcgctgcagatctaccccatcagtcaggccaatgccaatcagagggccggccgagct
ggccggacaggcccaggccattgtttcaggctctacacccagagtgcctacaagaatgag
ctgctgacgaccacggtgcctgagatccagcgcaccaacctcgccaatgtagtgctcttg
ctcaagtccctgggtgtgcaagacctgctgcagttccacttcatggatccgccccctgaa
gacaatatgcttaactccatgtaccagctgtggatcctgggggccctggataacacaggt
ggtctgacctctacaggacgcctcatggtggagttcccactggaccctgcactctccaaa
atgctcattgtctcctgtgacatgggttgcagctctgagatcttgcttgttgtctccatg
ttgtctgtgcctgccatcttttaccggcctaagggccgagaggaggaaagtgaccaagtg
cgggaaaaatttgctgttccagagagtgatcacttgacttatttgaatgtttacctgcag
tggaaaaacaacagctattctaccctgtggtgcaatcagcacttcatccatgccaaggcc
atgcggaaggtgcgggaggtgcgtgcccagctcaaggacattatggtgcagcagcgaatg
agcctggcatcctgtggtacagactgggatgttgtcaggaagtgcatctgtgctgcatat
ttccatcaggctgcaaagctgaagggcattggggagtatgtgaacatccgcacaggcatg
ccctgccacctgcaccccacgagctctttgtttggcatgggctacacaccagactatatt
gtgtaccatgaattagttatgactactaaggagtacatgcagtgtgtcactgctgtagat
ggagagtggctggcagagctgggccccatgttctacagtatcaaacatgctggcaagtca
cgccaggagaaccggcgccgtgccaaggaggaggcgtctgccatggaagaggaaatggct
ttggcagaggagcagctgcgtgcccgccgggaggagcaggagcgccgtaacccactgggc
agtgcaaggtctactaaaatctatacccctgggcgaaaggagcagggggaggcagtgacc
ccacgacgcaccccagcccgctttggtctctaa
DBGET
integrated database retrieval system
