Taeniopygia guttata (zebra finch): 100226839
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Entry
100226839 CDS
T01082
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100226839 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100226839 (MSH2)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100226839 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
100226839
NCBI-ProteinID:
XP_030124723
Ensembl:
ENSTGUG00000005502
UniProt:
H0Z563
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All DBs
Position
3:complement(91212982..91261088)
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKPKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLESNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSTINEEYIRNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPVKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggcggcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactgagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaagaagttctctttgcc
aacaatgacatgtccacagccatcggggttgtgggggtgaagctgtctgctgctgatggg
cagagagtagtaggagtgggctatgttgacactacgctgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctccaaccttgaagctctactggttcagctgggcccaaag
gagtgtgtgctgccaggaggagagactgcaggagagatggggaaactcagacaagtcatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttgaaaccaaaaaaggaagagcagctgaacagtgcagca
ctgccagagatggaaaagcaggttgctgtttcatctttgtcagctgttatcaagtttttg
gagttgctgtcagatgagtctaattttggacagtttgaactgactacgtttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgcaaatactgcacagtctctagctggtttactgaataaatgcagaacgcctcaa
ggacaaagactagtcaatcagtggatcaagcaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagagctacgtcagtgccttcaa
gaagatctgttacgacgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgttaccgaatgttccaggctatcaatcaactgcctaatgtt
gtacaagctctagaaaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttaatgatatctgctctgacttctcaaagtttctggagatgatagaaacaacg
ttggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattgagagagaagatgaatgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagtcaaactca
cagtttgggcatcactttagggtaacttgtaaggaggaaaaagctctccgtaacaattca
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagc
accatcaatgaagaatatataaggaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccatacagaccatgaatgat
gtgatagctcagctggatgccatcgtcagctttgcccacgtgtccaacggagccccggtg
ccctacgtccggcccgtcgttctggagaaggggcagggcaggattgtgctgaaaggcgcc
aggcacccctgcatcgaagtgcaggacgaggtggccttcatccccaatgacatcaccttc
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaacg
tacatccgacagacaggggtgattgtccttatggcccaaattgggtgttttgtgccatgt
gagtctgcagaaatcaccattgtggattgtatcctggctcgggtgggagctggagacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaactccctgataatcattgatgagctgggaagaggaacttctacctat
gatggctttggcttggcctgggccatctcagagtacattgccagcaaaatctgtgggttt
gccatgtttgctacacacttccatgagctcacagctcttgctgaccaagtgccgacagta
aacaacctccatgtcactgctctgaccagcgatgacacactgaccatgctttatcgtgtc
aaggagggtgtttgtgaccagagttttggaatacatgtagcagagttggcagctttccca
aagcatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagtcaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcggaagaagacattaaagtcaagttgaaacagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcatga
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