Taeniopygia guttata (zebra finch): 100227075
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Entry
100227075 CDS
T01082
Symbol
ZCCHC7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7
KO
K12597
protein AIR1/2
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100227075 (ZCCHC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100227075 (ZCCHC7)
03016 Transfer RNA biogenesis [BR:
tgu03016
]
100227075 (ZCCHC7)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100227075 (ZCCHC7)
Transfer RNA biogenesis [BR:
tgu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100227075 (ZCCHC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
AIR2-like_ZnK4
zf-CCHC_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
100227075
NCBI-ProteinID:
XP_030113878
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All DBs
Position
Z:complement(78592670..78684036)
Genome browser
AA seq
593 aa
AA seq
DB search
MDQNSDSSLSRIFTGYGLEDTEVYEDELYPEESSSEQSVDSEVEFHLYSQIHYSQDLGEI
STLEMGEEAEVGGAMDQSSGLTEKQDEDEKLTGGGTQLSDEPEIIVLSDTPDEDSIYKSK
AKRPRYSSAQGKTHIHPVSSTPNHTRAAGCNAPCPPESGVRTPRQRSSSSGRPAPAFAAG
PSAIEDVFSAGPSAIEDLLVIDSSSEEEEEISDSDNIESWMLLGAGADDSDGDIMLNLEG
CAAAVRKGKTDVNWSISHKDLEAQISNYGGVRHSSMRYYRGDKSVTCRNCQRPGHLSKNC
PTPKKAPPCCLCAGRDHLQHSCPARFCLNCCLPGHCFKECLERAYWNKHCNRCDMKGHYA
DACPEIWRQYHLTTKPGPIKAADSPSERAVSVYCYNCSRKGHLGYECSEKRMQGNMFPTS
PFVCYYDDECDIKRRANRLKRKVADLQEAGLLPEQSETPLQEEQLEAPSHKKKSKLSKLW
KEQQGKPSRSSEQQKKMKVNRAKKAQEKHRRDAQMHSEAEDFPRGHRQQGCKGSRARRRS
LFQALSGKATCAEQPLEGAKRKKKWKKQRNDSPDSRDNLFLIKQRKKSKQKSW
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaactcggactcttcactttccagaatatttactgggtatggtcttgaggat
actgaagtgtacgaagatgaactttatcctgaggagtcgtccagcgagcagagtgttgat
agtgaggtggagtttcatctctacagccagatccactactcccaggaccttggagaaatc
agcacactggaaatgggtgaagaagctgaggttggaggagccatggatcaaagttcaggt
ctgactgagaaacaggatgaagatgagaaactcactggtggtggtactcagctttcagat
gagcccgagatcatcgtcctgtctgataccccagatgaagatagcatatacaaaagcaag
gcaaagaggccaagatattcttcagctcaaggtaaaacacacatccaccccgtatcttcc
acaccaaatcacaccagagctgctggatgtaatgccccgtgtccccctgagtctggcgtg
cgcaccccaaggcagagaagcagcagcagtgggaggcctgccccagcctttgctgctgga
ccttcagccatcgaggacgtgttttctgctggaccttcagccatcgaggacctgttggtg
atagacagcagctcggaggaggaggaggagatctctgacagtgataacatcgaaagctgg
atgctcctgggagctggtgctgatgactcggatggagacatcatgttgaacctcgagggc
tgtgccgctgctgtcaggaaaggaaaaactgatgtgaactggtccatctctcataaagac
ttagaggcacagatctccaactatgggggtgtgaggcacagcagcatgcggtactacaga
ggtgacaaaagtgttacgtgtaggaactgccagagaccaggacatttgtccaagaactgt
cccactccaaagaaagcccccccgtgctgtctgtgtgcaggaagagaccatctgcagcac
agctgcccagcacgtttctgcctgaactgctgcttgcccgggcactgtttcaaggagtgc
ctggagagagcctattggaacaaacactgcaaccgctgcgacatgaagggccactatgct
gatgcttgcccagaaatatggaggcagtatcacctaacaacaaagccgggacccatcaag
gcagcagactcgccctcggagcgcgcggtgtccgtgtactgctacaactgctcccgcaaa
ggacacctcggatacgagtgctcagagaagaggatgcagggaaacatgttccccacttct
cccttcgtctgctactacgatgatgagtgcgacatcaagaggagagccaacaggttaaaa
agaaaggtggcagacctgcaggaagccggccttctgccggaacagtctgaaacacccctt
caggaggagcagcttgaggcgcccagccacaagaaaaagagcaagcttagcaagctttgg
aaagaacaacaggggaagccaagcaggagcagtgagcagcaaaagaagatgaaggtgaac
cgggcaaagaaggcccaggagaagcacaggagggatgctcaaatgcacagcgaggcggag
gacttccctcgggggcacaggcagcagggctgcaagggcagcagggcccgccgcaggtcc
ctcttccaggcactctcaggcaaggccacgtgtgctgagcagcctctagaaggtgccaaa
aggaagaagaaatggaaaaagcagagaaatgatagtcctgacagcagggacaatctattc
cttataaaacagcggaagaagtccaagcagaaatcctggtga
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