Taeniopygia guttata (zebra finch): 100227239
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Entry
100227239 CDS
T01082
Symbol
GARRE1
Name
(RefSeq) uncharacterized protein KIAA0355 homolog
KO
K26671
granule associated Rac and RHOG effector protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100227239 (GARRE1)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100227239 (GARRE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4745
Stu2_CTS
Motif
Other DBs
NCBI-GeneID:
100227239
NCBI-ProteinID:
XP_030137963
Ensembl:
ENSTGUG00000009542
UniProt:
H0ZGZ4
LinkDB
All DBs
Position
11:1966847..2026348
Genome browser
AA seq
1053 aa
AA seq
DB search
MYCCSAQESKMDYKRRFLLGGSKQKVQQHQQYQMPELGRTLSAPLASATPSTPLVSPAAA
GGCSHPASHTTPIADIQQGISKYLDALNVFCRTSTFLTDLFSSVFRNSHYSKAAMQLKDV
QEHVMEAASRLTAAIKPEIAKMLMELSAGAANFKDQKEFSLQDIEVLGRCFLTVMQVHFQ
FLSQALQKVQPVAHSCFAEAVAQERKNVSGTGASNISPTNELEDAIRSWRGAAEATSRLR
ERGCDGCLAGIEVQQLFCSQSVAIPEHQLKELNMKIDSALQAYKVALESLGHCEYAMKAG
FHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPIQCELPTVPVQIGSHFLKGISFNESAA
ENLKLKTHTMLQLIKEAGCHNGLTPRDDSPVTEVLNQVCPSTWRGACKTAVQLLFGQAGL
VVVDTAQIENKEAYAPQISLEGSRIVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLVDV
LYTAVFDTHRWKEGREQALPCIQIQLQREISEFGSQVDMPSGNGSKSSGGLQKTFSKLTS
RFTKKTSCTSTSNTGSYSIPNTPSKNVFISSSSEEKAKMPTNMDARLQNILNIGNFPRSA
EALQPVQSTNNQLVNGFLVERRDSFFKPDDGKDDKGMNLPTDQEMQDVIDFLSGFNMGKS
QQTSPMVKRRNSVASATATEQKSGAVQQQPQSVSHTPLHPPQQGLSQQQSQKQQMQYYQH
LLQPIGPQQRVPAKWLSNSSQQQAPAVGAGLSHINQWNNPGFSDLSSDLYSLGLVSSYMD
NMMAEMLGQKPQGPRNNTWPNRDQTDGVFGMLGEILPFDPAVGSDPEFARYVAGVNQAMQ
QKRQAQHVRRPSTTRGNWPLPDDPHKTWPFPEYFTEGDVTNSWSGTQGDSASSSDETSSA
NGDSLFSMFSGPDLVAAVKQRRKHSSGEQEPSTLPSPPLLSAADDRSQDNKTKTWPPKAP
WQHTSSVPSTLPSQSAALYPMGSSVSQWSDTMQMLQSPLWASDCAPAAGLSSSFAYAQQQ
QQSQQASQHKQINKGFKSFPVKHERRPSYLHQY
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgtattgctgcagtgcacaagaaagcaaaatggactataagcggcgctttttgcttggc
gggtccaagcagaaagtgcagcaacaccagcagtatcaaatgcccgagctgggcaggacc
ctgagcgccccgctggcatcggccacccccagcacccccctggtgtccccggctgctgcg
ggcggctgctcccaccccgcctcccacacgacgcccatcgcagacatccagcagggaatc
tccaaatacctggatgcactcaatgtcttttgccgtacgagcactttccttacagacctt
ttcagcagcgtgttcaggaactcgcactactctaaggcagctatgcaactgaaagacgtg
caggaacatgtcatggaagcggcgagtcgactcacagcagcaataaaaccagaaatagca
aaaatgctgatggaactgagtgcaggagctgcaaacttcaaagatcaaaaagagttcagc
ctacaagatattgaggtacttgggcgatgtttcttgacagtgatgcaggtccacttccag
ttcctgtcacaagctttgcagaaagtccagccagtggcgcactcctgctttgctgaagct
gtagctcaggagaggaagaatgttagtgggactggagcctcaaacataagccccacaaat
gagctggaagatgcaataagatcatggagaggagcagcagaggccacatctcgactgcga
gaaagaggctgtgatggatgtttggcaggaattgaagttcagcagcttttctgctcacag
agcgtggccatccctgaacatcagctcaaagagctaaacatgaaaattgacagtgctttg
caggcttacaaagtggctctggagagcttgggtcattgtgaatatgcaatgaaggctggc
ttccacttgaacccaaaagcaattgaagcaagtcttcagggctgttgcagtgaagctgaa
gctcagcaaacaggaaggagacagactccacctcagcccattcagtgtgagctgcccact
gtccctgtccagattggatcccattttctgaaaggaatctccttcaatgagtctgcagca
gaaaacctgaagctgaaaacgcacacaatgctgcagttgatcaaggaagctggatgccat
aatggactcacaccccgggacgactctcccgtgactgaagtgctgaaccaggtctgccct
tccacgtggagaggagcctgcaaaactgctgtgcagctgttgtttggccaggctggactg
gtggttgtggacactgcacagattgaaaataaagaagcctatgctcctcagataagttta
gaaggatcaagaattgtggtgcaagttccatcaacatggtgtctgaaagaagatccagca
acaatgtctttgctacagaggagtctggatccggagaagactttggggctggtggatgtg
ctgtatactgctgtgtttgatacacacaggtggaaggaaggaagagagcaagctttgcct
tgtattcagatccagttacagcgtgaaatctcagaatttgggagccaagttgacatgcca
tcggggaatgggagcaaatcttcagggggtctgcaaaagacattctcaaaattgacttca
cggtttacaaaaaaaacttcctgcactagtacaagtaacacaggaagttactcaatcccc
aatacgccttccaaaaacgtcttcataagttccagctcagaggagaaagctaaaatgccc
actaacatggacgcacggttgcagaacatcctgaacattgggaacttccctcggagcgca
gaggccctgcagccggtgcagagcacaaataaccagctcgtcaatgggtttctagtggaa
agacgggacagcttcttcaaaccagatgatggcaaggatgacaaaggtatgaatttacca
actgaccaagaaatgcaagatgttatagatttcttgtctggttttaacatgggcaaatcc
caacagacttctccgatggtgaaaagaaggaactctgttgcatccgctacagcaacagaa
caaaagtcaggagcagttcaacagcagccgcagtctgtgtctcacaccccactgcatcct
cctcagcaaggcttgtcccagcagcagtcccaaaagcagcaaatgcagtattaccaacac
ttgcttcaacctattggaccacagcaacgtgtacctgccaaatggctcagtaattcctca
cagcagcaagctccggctgttggagctggattgtctcatataaatcagtggaacaatcct
ggtttttcagatttaagctctgatttgtacagcttgggtcttgtgagcagctatatggac
aatatgatggcagagatgttaggacagaaaccacaaggacctagaaacaacacatggcca
aatcgtgaccaaactgatggagtgtttgggatgttgggagaaatcctgccttttgaccct
gcagttggctccgatcccgagtttgcgcgctacgttgctggggtgaaccaggctatgcaa
cagaagaggcaagcacagcacgtccgccgtcccagcaccacgcgtggcaactggcctctt
cctgacgatcctcataaaacctggcccttccccgagtatttcacagagggtgatgtgaca
aacagctggtctggtactcaaggagactctgccagctcaagcgatgagacctcctcagct
aacggagacagtttgttctccatgttctcagggccagaccttgttgctgctgtaaagcag
aggagaaaacacagcagtggtgaacaggaacccagcacgctgccatcgcccccactcctc
tctgcagcagatgaccgcagtcaggataacaagaccaaaacctggcctcccaaggccccg
tggcagcacacatcctccgtgccgagcacgctgcccagccagagcgcggccctgtacccc
atgggcagctcggtgagccagtggagcgacaccatgcagatgctgcagtcgcccctgtgg
gccagcgactgcgccccggccgccggcctctcctccagctttgcctacgcgcagcagcag
cagcaatcccagcaggcttcccagcacaaacagatcaacaagggcttcaaatcgttccca
gtaaagcacgagcgcagaccatcttacctgcaccagtactaa
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