Taeniopygia guttata (zebra finch): 100227313
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Entry
100227313 CDS
T01082
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04382
Cornified envelope formation
tgu04510
Focal adhesion
tgu04512
ECM-receptor interaction
tgu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100227313 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100227313 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100227313 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100227313 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tgu04147
]
100227313 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
tgu00536
]
100227313 (COL4A4)
Exosome [BR:
tgu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100227313 (COL4A4)
Glycosaminoglycan binding proteins [BR:
tgu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100227313 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100227313
NCBI-ProteinID:
XP_030135972
LinkDB
All DBs
Position
9:complement(9817654..9884881)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIVFSTQGIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKPGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSVYILHFGKGLP
GERGDPGPPGMPGPRGSRGTTGPSGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGIPGRGEKGEKGLPGF
PGLRGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLLPIK
GPRGDPGFPGPAGEMGSVGPIGPSGLVGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGPKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGPRGVQGPPGTQGRKGQMGYPGGHGEKGDPGLSGAVGSPGLPGTPG
SAGQLGEKGEKGDPGRVRIKGLKGERGAPGLPGFPGQRGLDGRDGELGLPGEKGAEGDSG
VAILGDKGFPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDFGDMGNVGPPGPKGQKGET
VCITSPYPGYPGPPGFKGAQGQKGLKGLPGHPGPNGFDGPKGHQGRPGAGIPGPEGFRGT
AGDPGDEGERGSTIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGNRGLPGPTGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSRGPPGPPGSRGPPGLPGNKGPIGFPGDTG
SKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKMGLPGPSGECGDMGIKGERGPPGDSGFVN
LRLEKGQMGDPGFPGEHGLRGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SRGLPGPKGLQGITGFQGEPGDQGDVGLPGSPGYPGLTGSKGCKGKRGDPTPLLGPHGQK
GSLGDPGLPGLCGFPGEKGLPGIQGQPGRPGAKGDPGYPGLPGLPGATGPQGLPGEPGEK
GKPGILGPPGLQGLPGPQGRKGLPGLPGLDGLHGLKGQKGSAGAPGQSETGPPGYSGEIG
PKGDRGEPGWPGISIPGPPGERGFPGFPGKRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETIFVRGDPGDSGIRGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
VHGPQGPPGALGQPGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGQPGPQGIKGEEGSYGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGIPGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQERAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLAEEEIRPYISRCAVC
QAPAQPVALHSQDQSIPPCPPSWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcaactcaaggaattgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggagctcaaggtccaattgggtccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaaggacccagaggcaagcctggtttggatggctgcaatggctcaagggga
gacccaggattcccaggagaaaatggttatatgggaccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatattttgcattttggaaaaggacttcca
ggagagagaggtgatcctggaccccctggcatgcctggacctagggggtcaagaggtaca
acaggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccagggattggagtggatggacaaaagggggagccgggc
gacatcgggctgcctgggccgcctgggtcaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacctaaaggcatacctgggagaggagaaaagggcgaaaaaggccttcctggattc
cctggattgcggggtcatcctggttcttatggacctgcagggtttcctggaatgaagggt
gaaacaggatttgctggatttcctggacaacctggctatccaggcatacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccactgcttcctataaaa
ggtccacgaggagatcctggatttccaggtcctgctggtgaaatggggtcagttggacca
attggtccttcaggccttgtaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggggaccctggtttgcctgga
acaggtgaattaattccaggaagaccaggatttcctggaccaccaggcctaccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggaccaaaaggtcaaattggccttccaggaagaaaaggggcaaaaggagag
aagggaagtcaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtacccaaggaaggaaaggacaaatgggataccctggaggacacggagaa
aagggcgacccaggcctgtctggtgccgtgggatcaccagggctccctgggactcctggt
tctgctggacagcttggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggagcacctgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggggaactaggattgccaggggaaaaaggagctgagggcgattctgga
gtagccattctgggtgacaaaggattccctgggctcccgggacctcctggggtaaaaggc
cagatgggattgcctggcctggggcttcctgggtctccaggagccagaggtagccctgga
gactttggtgatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggatatccaggtcccccgggttttaaaggcgctcaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcca
aaaggccatcaaggaaggccaggagcaggaatccctgggccagaaggctttcgaggtaca
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggcccacctggcacagatggtcagaagggtcttccaggtgacaccacatatggccct
ccaggaatcccaggcaacaggggactgccaggacccactggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggtttaccaggctttaaaggtcagaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctctgggctcacgaggtccaccaggtcctccaggctca
cgcggtcccccaggacttccaggcaataaaggacccattggcttcccaggagatacagga
agcaaaggcattcaaggaccccagggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgcggagatatgggaataaaaggtgaaagggggcctccaggagacagtggctttgttaac
ctccgtctggagaaaggacaaatgggggacccagggtttcctggtgagcatggattgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccaggaaag
aatggtgttccaggactaccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaattacaggttttcaaggagagcca
ggtgaccagggtgatgttggcttacctggaagccctggatatccaggactgactggctcc
aaaggatgtaaagggaagagaggtgacccaactcctctgcttggtccacatggtcagaaa
gggtctctgggagatccaggattgccaggactttgtggatttccaggggagaagggttta
ccaggtatccaaggacagcctggaagaccaggagccaagggtgaccctggatatccaggg
ctacctggattaccaggagctacaggtcctcaaggattgccaggagaacctggagaaaaa
ggaaaacctggaattttgggacctccaggattgcaagggttacctggaccccaaggcaga
aaaggtcttcctggactgcctggactggatggcttgcatggattaaaaggtcaaaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattcctggcccccctgga
gaaaggggattcccaggatttccaggtaaaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcctcccctggtcctccaggtgatcaaggattacctggttta
gatggcatcagaggtgatcctgggaatcctggtcctcctggagagactatctttgtgcga
ggagatccgggtgacagtggcattcgaggggcaccaggtaatcctgggccacgaggacaa
cagggagccagaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgctttaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggcgaccctggtgaaccaggaaaa
gtagatgattcatgccctacaatcccagggcctcctggggaagcagggcagagaggagag
gatggctctgcaggattaccagggccaataggccagcctggaccccaaggcataaaaggt
gaagaaggatcatatggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggccag
actggcatcccaggacaaccaggtccccaaattagatctgcaagtggattcttgctcgtc
cttcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagcctgctgtacctggaaggacaagagagagcccataatcaagatcttggtctg
gcaggatcctgcctgcctgtgtttagcaccatgccatttgcctactgcaacatcaaccag
gtgtgttactacgccagccgcaatgacaagtcctactggctgtccagcgccgcgccgctg
cccacggcgccgctggccgaggaggagatccggccctacatcagccgctgcgccgtgtgc
caggcccccgcgcagcctgtggccctgcacagccaggaccagtccattcctccctgcccc
cccagctggaggagcctttggataggatactcgtttttgatgcacactggatctggtgac
cagggtggtggacagtccctcatgtcacccggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttctttgctaatgaatacagt
ttctggctgaccactgtgatgcctgagctgcagtttgcatcagcccccctgtcagggact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa
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