Taeniopygia guttata (zebra finch): 100227710
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Entry
100227710 CDS
T01082
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X4
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100227710
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100227710
Spliceosome [BR:
tgu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100227710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
AAA_22
Ank_2
nSTAND3
ATPase
PhoH
Ank_4
AAA_16
UvrD-helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
100227710
NCBI-ProteinID:
XP_030113890
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All DBs
Position
3:9337493..9362273
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AA seq
1224 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSEAHVVMTCDLALRTK
HAVRSLIQRFPVTNKERKELLPRTERGSVCAVASENKEVNKTSGRLNDGIPQVPVKRGES
EFDSFRQSLPVLEKQEEIVQIIRDNKIVLVIGESGSGKTTQIPQFILDDCYKNGTPCRVF
CTQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLGTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNNLKLILSSAALDANLFIRYFGSCP
VIHIQGRPFQVKEMFLEDILRSTGYANKEMVKYKEKKQQEEKQKNTLAEWCSALDNTNKG
TSRRQKSVPRTNEEYKWLDDGGDTVFNQLTEKDVNCLESWIVKEMDSCLSDIWLHKDIDL
FAQLLNLILTENVSVDYRHSETGATALMISSGRGFLSQVEQLISMGASIHCKSSNGWMAV
DWARHFGQTEVVHLLESYSASFGFGNMDESSLVQKSASDLSAEDRELLTAYHHSFDDEKV
DLDLIMHLLHSICHSSDAGAILIFLPGYDEIVSLRDRIVFDDKRFTDNAHRYQVFMLHSS
MQTLYQKKVLESPPFGIRKIILSTNIAETSITVSDVVFVIDSGKVKEKSFDALSRVTMVK
MGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKILS
PVNCPIVDFLMKAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKM
VLYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAVLCRKRFAAGTFSDHMALLRAF
QAWQKARSDGWERAFCEKNFLSQATMETIAGMRTQVLGQLRASGFVRARGGADIRDVNTN
SENWAVIKGALVAGMYPNLVHVDRDSLVLTESKETKVRFHPTSVLGQSQYKKIAPANGQA
AAIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVALFCGPARLPSNALQASSSFRGRG
VSNDSSDSEMEDKTSADLALLKLDEGLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKL
WSEVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWMSSNSRNSSTE
TELSDFSHAEKVSVKSTSPALHQPKKYKEKDILLSRQFSDDRSAQSSVKPADSSSYSNAC
ATPSSPVSGKGLTAGLLAKGAKRS
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccttctagtttcactagtactgaaagagcatttgttcaccggctctgtcag
tctcttggactggtgtctaaaagcaaaggaaaaggagccaatcgatacctgactgtaagg
aagaaggatgtgtcagaggcacacgtagtcatgacttgtgacttggctctccgtacgaaa
cacgccgttcggagtctaattcagcgctttcccgtcacaaataaggaacgcaaggagctc
ctgccaaggacagagcgaggaagtgtctgtgctgttgcatccgaaaacaaagaagtaaac
aagacaagtggtcgacttaatgatggtatcccccaggtcccagtgaaaagaggggaatca
gagtttgattccttcaggcagtcactaccagttcttgaaaaacaggaagaaattgtccaa
atcataagggacaataaaattgttttagttataggagagtctggatcaggaaaaacgaca
cagatccctcaatttatccttgatgactgctacaagaatggaactccctgtcgtgtgttt
tgtactcagccaagacgtttagcagctgttgctgtggctgaaagagtggcagcagaaaga
agagagaagattggccagacaattggttaccagatccggttagaaagcagggtttctcca
aagacactggtaacattctgcactaatgacatgcttcttggcacgctgatggcaggagac
agcaccctctccactgtgacccatgttattgtggatgaagtacatgagagggataggttc
agcgacttcttgctaataaaactgagagatgtgctgcaaaaccagaataatttaaaacta
attctctctagtgctgctctagatgcaaatctcttcattaggtattttggaagctgccca
gtaatacatatccaagggagaccttttcaagttaaagagatgtttctggaggacatttta
cgaagcactgggtatgcaaacaaagagatggtgaagtacaaagaaaagaagcagcaagaa
gagaaacagaagaacactcttgctgagtggtgttcagctctagataacactaacaaaggg
acatctcggagacaaaaatcagttccaaggacaaatgaggagtacaaatggttggatgat
ggtggtgacacagtatttaatcaactgactgaaaaagatgtgaattgccttgaatcgtgg
atagtaaaagaaatggattcctgtctttctgacatctggttgcataaagatattgatttg
tttgctcagctgttaaatcttattttaactgaaaatgtcagtgttgattataggcacagt
gaaactggtgcaactgctctgatgatttcttcagggagaggctttttgagtcaagtagaa
cagttgatcagcatgggagcaagtatccactgcaaatcatctaatggctggatggctgtg
gactgggctaggcactttggacagacggaggttgttcatctgttggaatcctacagcgct
tcattcggatttggaaacatggatgaaagttccctggtccaaaaaagtgctagtgacctt
agtgcagaggacagagagctactgacagcttatcatcacagttttgatgatgaaaaagtg
gatctggatctgataatgcacttacttcacagcatctgtcatagttcagatgcaggagca
attttaatatttcttcctgggtatgatgagatagtgagcctgagagaccgcattgttttc
gatgataagagattcactgataatgctcacagataccaagttttcatgcttcattcaagt
atgcagactttgtaccagaagaaagtgcttgaaagtccaccttttggcattcgcaaaatt
attctttctactaatattgcagaaaccagcataacagtcagtgatgtggtgtttgtcatt
gactcaggcaaggtgaaagagaagtcttttgatgcactgagtcgtgttacaatggtaaaa
atggggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcag
cctggagtctgctttcgtctcttcagcaggctccgatttcagaatatgttggaatttcaa
tctccagaacttctaagaatgccgcttcaggagatctgtttgtacacaaaaattctgtct
ccagttaattgtccaattgtagactttcttatgaaagctcctgatcctccgcctgctgta
actgtgagaaatgctgtgcatatgcttaagaccatagatgccatggacccttgggaagat
ctcactgagcttggttatcacctcactgaattacctgtagagccacacctcggtaaaatg
gtgttgtatgctgtagttctgaagtgcctggatcctgttctgaccattgcctgtgctctt
gcctgccaagacccttttgtgctgcccacgctggcctcccaaaagcgtgcagccgtgctg
tgcaggaagcgttttgctgccggaacgttcagtgaccacatggccctgctcagggctttc
caggcatggcagaaggcacgcagtgacggctgggagagagccttctgtgaaaagaacttc
ctatcccaagccacaatggaaaccattgcaggaatgagaacacaggtgcttggccagctt
agagcctcaggttttgtgagagccagaggaggagctgatattagagatgttaatactaac
tctgagaactgggctgtaattaaaggtgccttagtggccgggatgtatcccaatcttgtg
catgtagacagagacagcctggtgttgacggaatcaaaggagacgaaagtgcgatttcat
cctacctctgttcttggtcagtctcagtataaaaagattgccccagcaaatggacaagct
gcagccatccaggctctccctacagactggcttatatatgatgaaatgacgagagctcac
aagacagcaaacatcaggtgctgctctgttgtgacacctgtcacggtggccctcttctgt
ggaccagccagactgccaagtaatgccttgcaggcatcttcatcctttcgagggagaggg
gtatctaatgatagcagcgacagtgagatggaggacaagacatctgctgatctggcactg
ctgaagctggatgaagggctccatctcaaactggaccctgaagctgctggtatgctgctg
caactcaggcagaagtggcacagcttgtttctgcgtcgcatgcgagctccttctaagctg
tggtctgaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaa
cagtctgcaggtctacagcagccttcaggaattggccagagaccaaggcctgtgacttgt
gaagaacttcctttggcatctacatggatgtcaagcaacagcagaaacagctcaacagaa
acagaattgtctgacttctctcatgctgaaaaggtttcagtgaaatctacttctcctgca
ctccaccagccaaagaagtacaaagaaaaagacattttgctctccagacaattctcagat
gacagatccgctcagtcctcagtgaagcctgcagacagcagtagctattccaacgcctgt
gctactccttcttctccagtgtcgggaaaggggctaacagcaggcctgttagctaaagga
gcgaaaagaagctga
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